View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_high_7 (Length: 460)

Name: NF18433_high_7
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_high_7
NF18433_high_7
[»] chr7 (1 HSPs)
chr7 (20-442)||(25635328-25635752)
[»] chr8 (1 HSPs)
chr8 (181-216)||(32840965-32841000)
[»] chr2 (3 HSPs)
chr2 (178-216)||(43570466-43570504)
chr2 (179-216)||(16451172-16451209)
chr2 (179-215)||(36043958-36043994)
[»] chr5 (1 HSPs)
chr5 (179-216)||(7853694-7853731)
[»] chr1 (1 HSPs)
chr1 (179-216)||(3887611-3887648)
[»] chr4 (1 HSPs)
chr4 (179-215)||(20936210-20936245)
[»] chr3 (1 HSPs)
chr3 (180-216)||(5436127-5436163)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 25635752 - 25635328
Alignment:
Q  20 gagcacagatctcatagttaacttatccaccaaatcaaaatgcaaggcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaa 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25635752 gagcacagatctcatagttaacttatccaccaaattaaaatgcaatgcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaa 25635653  T
Q  120 gcaaacaataaaa-agttaattaatttccatttaaactatattggaaaacttacaaaa-taagcttatgaacaatatcataagttgttttcataagttca 217  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  25635652 gcaaacaataaaatagttaattaatttccatttaaactatattggaaaacttacaaaaataagcttatgaacaatatcataagttgttttcataagttct 25635553  T
Q  218 actaaaaaaccacacattgggtagaaaatccaaacaggttcatgatcagttaagatatatagcagtataataaatgaaattttgtgtaaattagaactaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25635552 actaaaaaaccacacattgggtagaaaatccaaacaggttcatgatcagttaagatatataacagtataataaatgaaattttgtgtaaattagaactaa 25635453  T
Q  318 aattagatttttgatagtggaaggtgtataagattaaaacgctaggtgtataaagcataagttctcacctgaaaatattgaagttgagaataccttatcg 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25635452 aattagatttttgatagtggaaggtgtataagattaaaacggtaggtgtataaagcataagttctcacctgaaaatattgaagttgagaataccttatcg 25635353  T
Q  418 gagaattggttcagttctcagttct 442  Q
    |||||||||||||||||||||||||    
T  25635352 gagaattggttcagttctcagttct 25635328  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 32841000 - 32840965
Alignment:
Q  181 cttatgaacaatatcataagttgttttcataagttc 216  Q
    |||||||||||| |||||||||||||||||||||||    
T  32841000 cttatgaacaatgtcataagttgttttcataagttc 32840965  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 43570466 - 43570504
Alignment:
Q  178 aagcttatgaacaatatcataagttgttttcataagttc 216  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  43570466 aagcttatgaacaatgtcataagctgttttcataagttc 43570504  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 16451172 - 16451209
Alignment:
Q  179 agcttatgaacaatatcataagttgttttcataagttc 216  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  16451172 agctcatgaacaatgtcataagttgttttcataagttc 16451209  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 36043958 - 36043994
Alignment:
Q  179 agcttatgaacaatatcataagttgttttcataagtt 215  Q
    |||||||||||||| || |||||||||||||||||||    
T  36043958 agcttatgaacaatgtcgtaagttgttttcataagtt 36043994  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 7853694 - 7853731
Alignment:
Q  179 agcttatgaacaatatcataagttgttttcataagttc 216  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  7853694 agcttatgaacaatgtcataagttgtttccataagttc 7853731  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 3887648 - 3887611
Alignment:
Q  179 agcttatgaacaatatcataagttgttttcataagttc 216  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  3887648 agcttatgaacaatgtcataagatgttttcataagttc 3887611  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 20936245 - 20936210
Alignment:
Q  179 agcttatgaacaatatcataagttgttttcataagtt 215  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20936245 agcttatgaaca-tatcataagttgttttcataagtt 20936210  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 5436127 - 5436163
Alignment:
Q  180 gcttatgaacaatatcataagttgttttcataagttc 216  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  5436127 gcttatgaacaatgtcataagttgttttcagaagttc 5436163  T

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