View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_high_8 (Length: 433)

Name: NF18433_high_8
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_high_8
NF18433_high_8
[»] scaffold0016 (2 HSPs)
scaffold0016 (8-236)||(53813-54039)
scaffold0016 (232-417)||(51105-51290)
[»] scaffold0642 (3 HSPs)
scaffold0642 (232-417)||(6663-6846)
scaffold0642 (134-197)||(4102-4165)
scaffold0642 (192-236)||(4184-4228)
[»] scaffold0345 (3 HSPs)
scaffold0345 (232-417)||(16576-16759)
scaffold0345 (134-197)||(14014-14077)
scaffold0345 (192-236)||(14096-14140)
[»] scaffold0105 (3 HSPs)
scaffold0105 (232-417)||(22223-22406)
scaffold0105 (134-197)||(24904-24967)
scaffold0105 (192-236)||(24841-24885)
[»] chr4 (4 HSPs)
chr4 (232-417)||(15708819-15709002)
chr4 (232-417)||(26795792-26795981)
chr4 (134-197)||(15707358-15707421)
chr4 (192-236)||(15707440-15707484)
[»] chr2 (3 HSPs)
chr2 (232-417)||(3380883-3381065)
chr2 (134-189)||(3378229-3378284)
chr2 (192-236)||(3378316-3378360)
[»] chr8 (4 HSPs)
chr8 (268-417)||(44498316-44498463)
chr8 (134-197)||(44495504-44495567)
chr8 (232-270)||(44498151-44498189)
chr8 (195-236)||(44495589-44495630)
[»] scaffold1526 (2 HSPs)
scaffold1526 (134-189)||(1249-1304)
scaffold1526 (192-236)||(1173-1217)
[»] chr6 (1 HSPs)
chr6 (49-133)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 54039 - 53813
Alignment:
Q  8 tgagatgaaattgaatattactaagtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54039 tgagatgaaattgaatatta--aagtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg 53942  T
Q  108 atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53941 atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattc 53842  T
Q  208 actctagagcggtgagtggcttcgttctt 236  Q
    |||| ||||||||||||||||||||||||    
T  53841 actccagagcggtgagtggcttcgttctt 53813  T

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Target: scaffold0016; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 232 - 417
Target Start/End: Complemental strand, 51290 - 51105
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51290 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatg 51191  T
Q  332 gnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    |       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51190 gaaaaaaatgtattcaacccaattagggggcgaagaagtgttaaagagtctaaaatgtcaagactgtgggaaccaagcaaagaagg 51105  T

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Target: scaffold0642 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 232 - 417
Target Start/End: Original strand, 6663 - 6846
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6663 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat 6762  T
Q  331 ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||       ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6763 ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaagg 6846  T

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Target: scaffold0642; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

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Target: scaffold0345 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 232 - 417
Target Start/End: Original strand, 16576 - 16759
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16576 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat 16675  T
Q  331 ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||       ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16676 ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaagg 16759  T

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Target: scaffold0345; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

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Target: scaffold0105 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 232 - 417
Target Start/End: Complemental strand, 22406 - 22223
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22406 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat 22307  T
Q  331 ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||       ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22306 ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaagg 22223  T

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Target: scaffold0105; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

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Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 232 - 417
Target Start/End: Original strand, 15708819 - 15709002
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15708819 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat 15708918  T
Q  331 ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||       ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15708919 ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaagg 15709002  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 232 - 417
Target Start/End: Complemental strand, 26795981 - 26795792
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaagg----aaactcataaaaggatgatctttagtttaaa-gctaaag 326  Q
    |||||||||||||||||||||||| |||||||||  |||||| |||| |||||||||    ||||| |||||| |||||||||||||| ||| |||||||    
T  26795981 ttcttttatgcccatcacatagagtatatagtatggtaccactctacaaccaaaaggttgtaaactaataaaaagatgatctttagttaaaaagctaaag 26795882  T
Q  327 agatggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
     |||||       || ||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26795881 ggatggaaaaga-tgcattcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagactgtgggaaccaagcaaagaagg 26795792  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 232 - 417
Target Start/End: Original strand, 3380883 - 3381065
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3380883 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat 3380982  T
Q  331 ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||       |||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3380983 ggaaaaaaatgtattcaacccaattagggg----agaagtgttaaagggactaaaatgtcaagactgtgggaaccaagcaaagaagg 3381065  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 268 - 417
Target Start/End: Original strand, 44498316 - 44498463
Alignment:
Q  268 taccaccctacgaccaaaaggaaactcataaaaggatgatctttagttt-aaagctaaagagatggnnnnnnntgtattcaacccaattagggggcgaag 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||| |||||||   ||    
T  44498316 taccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaactaggggg---ag 44498412  T
Q  367 aagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaagg 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44498413 aagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaagg 44498463  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 44498151 - 44498189
Alignment:
Q  232 ttcttttatgcccatcacatagaggatatagtataatac 270  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44498151 ttcttttatgcccatcacatagaggatatagtataatac 44498189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  195 catccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  134 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  192 acccatccatgaattcactctagagcggtgagtggcttcgttctt 236  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  49 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 133  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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