View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_high_9 (Length: 432)
Name: NF18433_high_9
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 79 - 415
Target Start/End: Complemental strand, 3438397 - 3438061
Alignment:
| Q |
79 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaggcacatataactaaa |
178 |
Q |
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| T |
3438397 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaa |
3438298 |
T |
|
| Q |
179 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgtcatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
278 |
Q |
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| T |
3438297 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
3438198 |
T |
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| Q |
279 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3438197 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
3438098 |
T |
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| Q |
379 |
agcatcaacttcatgaacagtaaccaaatcacttact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3438097 |
agcatcaacttcatgaacagtaaccaaatcacttact |
3438061 |
T |
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