View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_12 (Length: 412)
Name: NF18433_low_12
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 11845420 - 11845794
Alignment:
| Q |
18 |
cttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtag |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845420 |
cttaccacggtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtag |
11845519 |
T |
|
| Q |
118 |
ttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgtatagatgagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845520 |
ttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgtatagatgagaa |
11845619 |
T |
|
| Q |
218 |
tatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845620 |
tatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaat |
11845719 |
T |
|
| Q |
318 |
ggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggatcaggggattgaataagaaacttagt |
392 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11845720 |
ggaagaaaacgaccaactatgaaagaagttacattaaaattggaagggatcaggggattgaataggaaacttagt |
11845794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 11850149 - 11850523
Alignment:
| Q |
18 |
cttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| | |
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| T |
11850149 |
cttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagcttcggagttg |
11850248 |
T |
|
| Q |
118 |
ttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgtatagatgagaa |
217 |
Q |
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||||||||||||||||||| ||||||||||| |||| | ||||||||||| |||||||||| ||||||||||||||||||| |||||||||| ||| | |
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| T |
11850249 |
ttcttgctgaacttttaacgggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttattcagtgtatagaggagga |
11850348 |
T |
|
| Q |
218 |
tatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaac |
317 |
Q |
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| T |
11850349 |
tatgttgtttgatattattgacaaaagggttacgaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttgcgtatagatgcttagagttgaac |
11850448 |
T |
|
| Q |
318 |
ggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggatcaggggattgaataagaaacttagt |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850449 |
ggaagaaaacgaccaacaatgaaagaagttacattaaaattggaagggatcaggggattgaataagaaacttagt |
11850523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 9118765 - 9118846
Alignment:
| Q |
43 |
ttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgc |
124 |
Q |
| |
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|||| ||||||||||| |||||| | || || |||||| ||||||||||||||||| | |||||| |||||||||||||| |
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| T |
9118765 |
ttggatacttagacccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgc |
9118846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 1815836 - 1815785
Alignment:
| Q |
72 |
acaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
123 |
Q |
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||||| ||||| || |||||||||||||||| |||||| ||||||||||||| |
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| T |
1815836 |
acaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttg |
1815785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 1843158 - 1843248
Alignment:
| Q |
33 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
123 |
Q |
| |
|
||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1843158 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1843248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 1857169 - 1857259
Alignment:
| Q |
33 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
123 |
Q |
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||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1857169 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 1868767 - 1868857
Alignment:
| Q |
33 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
123 |
Q |
| |
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||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1868767 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1868857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 30116312 - 30116418
Alignment:
| Q |
35 |
aggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgctgaactttta |
134 |
Q |
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|||||||||||| ||| | || ||||| || ||||| ||||||||||||| || || |||||||||| ||| ||||| || || |||| ||| ||| || |
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| T |
30116312 |
aggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtgcttgttgagcttata |
30116411 |
T |
|
| Q |
135 |
accggta |
141 |
Q |
| |
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||||||| |
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|
| T |
30116412 |
accggta |
30116418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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