View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_18 (Length: 328)
Name: NF18433_low_18
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 3882238 - 3882548
Alignment:
| Q |
1 |
tcagaataaaggtaaaatattcatggacgtatgctattgctaagagttctatgcatgcattctgtacagtgtgcttcaaactagttggttggaatttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882238 |
tcagaataaaggtaaaatattcatggacgtatgctattgctaagagttctatgcatgcattctgtacagtgtgcttcaaactagttggttggaatttcat |
3882337 |
T |
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| Q |
101 |
attgatttttagagatactagatatgagcccatgtcaattttttcttttagcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882338 |
attgatttttagagatactagatatgagcccatgtcaattttttcttttagcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagtt |
3882437 |
T |
|
| Q |
201 |
ccagatgaattgaggtagttagattggcaaaagcctttttgcaggttgaaatcaactatcacagtttgtaagtatattgatatcatgatacaggtttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3882438 |
ccagatgaattgaggtagttagattggcaaaaacctttttgcaggttgaaatcaactatcacagtttgttagtatattgatatcatgatacaggtttttg |
3882537 |
T |
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| Q |
301 |
tatgacatacc |
311 |
Q |
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| T |
3882538 |
tatgacatacc |
3882548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 308
Target Start/End: Complemental strand, 32443749 - 32443589
Alignment:
| Q |
146 |
ttttagcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagttccagatgaattgaggtagttagattggcaaaagcctttttgcagg |
245 |
Q |
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||||||||||||||||||||||| |||||||||||| || | |||||| ||||||| |||||| || | ||||| | | |||||||| |||||||||||| |
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| T |
32443749 |
ttttagcatagtatcgttttaaa-tcctctggtagttaagt-ttgtggtgtagttctagatgagttaatgtagtcaaagtggcaaaaacctttttgcagg |
32443652 |
T |
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| Q |
246 |
ttgaaatcaactatcacagtttgtaagtatattgatatcatgatacaggtttttgtatgacat |
308 |
Q |
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| T |
32443651 |
ttgaaatcgactatcatagtttgttagtatattgatatcatagtacaggtttttgtatgacat |
32443589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 30342565 - 30342611
Alignment:
| Q |
70 |
tgtgcttcaaactagttggttggaatttcatattgatttttagagat |
116 |
Q |
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| T |
30342565 |
tgtgcttctaactaattggttggaatttcatattgatttttagagat |
30342611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 23918323 - 23918372
Alignment:
| Q |
70 |
tgtgcttcaaactagttggttggaatttcatattgatttttagagatact |
119 |
Q |
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| T |
23918323 |
tgtgcttctaactaattggttggaatttcatattgatttttagagatact |
23918372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23918261 - 23918294
Alignment:
| Q |
1 |
tcagaataaaggtaaaatattcatggacgtatgc |
34 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
23918261 |
tcagaataaaggtaaaatattcatggatgtatgc |
23918294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 18987200 - 18987154
Alignment:
| Q |
70 |
tgtgcttcaaactagttggttggaatttcatattgatttttagagat |
116 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
18987200 |
tgtgcttctaactaattggttggaatttcatattgatttttagagat |
18987154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18987262 - 18987229
Alignment:
| Q |
1 |
tcagaataaaggtaaaatattcatggacgtatgc |
34 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
18987262 |
tcagaataaaggtaaaatattcatggatgtatgc |
18987229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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