View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_low_20 (Length: 314)

Name: NF18433_low_20
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_low_20
NF18433_low_20
[»] chr4 (22 HSPs)
chr4 (8-314)||(44145846-44146152)
chr4 (8-141)||(44155919-44156052)
chr4 (195-314)||(43961525-43961644)
chr4 (193-308)||(55080700-55080815)
chr4 (198-314)||(22186834-22186950)
chr4 (220-305)||(37761588-37761673)
chr4 (240-308)||(5825017-5825085)
chr4 (240-314)||(4437480-4437554)
chr4 (220-314)||(54576362-54576456)
chr4 (192-314)||(17182490-17182614)
chr4 (141-201)||(44156147-44156207)
chr4 (258-308)||(51075218-51075268)
chr4 (195-255)||(56135905-56135965)
chr4 (220-314)||(7977530-7977625)
chr4 (241-314)||(54001162-54001232)
chr4 (224-314)||(21694929-21695018)
chr4 (240-298)||(29993826-29993884)
chr4 (220-314)||(47846090-47846184)
chr4 (192-308)||(11089637-11089756)
chr4 (211-289)||(35543333-35543411)
chr4 (254-314)||(9030331-9030391)
chr4 (201-277)||(11842325-11842401)
[»] chr8 (15 HSPs)
chr8 (192-314)||(39449419-39449546)
chr8 (220-314)||(12022178-12022272)
chr8 (195-314)||(20472702-20472821)
chr8 (216-314)||(9933356-9933454)
chr8 (220-305)||(30365254-30365339)
chr8 (220-314)||(43732802-43732896)
chr8 (242-314)||(16024269-16024341)
chr8 (255-314)||(29937617-29937676)
chr8 (223-314)||(34196424-34196514)
chr8 (231-314)||(8815187-8815270)
chr8 (255-305)||(40633059-40633109)
chr8 (242-291)||(8671849-8671898)
chr8 (263-314)||(9434377-9434428)
chr8 (261-308)||(43826453-43826500)
chr8 (257-298)||(6453315-6453356)
[»] scaffold0095 (1 HSPs)
scaffold0095 (192-314)||(8262-8390)
[»] chr7 (20 HSPs)
chr7 (220-314)||(33519163-33519257)
chr7 (192-308)||(48013624-48013740)
chr7 (195-314)||(23116269-23116389)
chr7 (211-298)||(39646600-39646687)
chr7 (240-314)||(28074158-28074232)
chr7 (220-314)||(36267588-36267682)
chr7 (215-308)||(21857468-21857560)
chr7 (224-285)||(30592292-30592353)
chr7 (220-305)||(48881593-48881678)
chr7 (240-289)||(3143624-3143673)
chr7 (259-314)||(3215934-3215989)
chr7 (242-313)||(48015323-48015394)
chr7 (220-298)||(37620905-37620983)
chr7 (257-314)||(16833810-16833867)
chr7 (249-313)||(8122264-8122328)
chr7 (231-298)||(2087785-2087852)
chr7 (193-248)||(17853051-17853106)
chr7 (225-308)||(35422085-35422168)
chr7 (255-298)||(37925972-37926015)
chr7 (220-286)||(31364080-31364146)
[»] chr5 (9 HSPs)
chr5 (220-314)||(10204691-10204785)
chr5 (220-308)||(33744228-33744316)
chr5 (220-291)||(15986659-15986730)
chr5 (195-308)||(40305670-40305788)
chr5 (195-314)||(8551427-8551547)
chr5 (220-314)||(34980925-34981019)
chr5 (231-310)||(6382446-6382525)
chr5 (240-314)||(6597845-6597919)
chr5 (220-314)||(10043367-10043461)
[»] chr3 (19 HSPs)
chr3 (196-314)||(40858680-40858798)
chr3 (220-314)||(34641107-34641199)
chr3 (211-314)||(42772147-42772250)
chr3 (195-314)||(48683727-48683848)
chr3 (195-314)||(41414193-41414313)
chr3 (224-291)||(18086019-18086086)
chr3 (221-298)||(8432297-8432372)
chr3 (222-314)||(16884010-16884100)
chr3 (188-304)||(54985696-54985812)
chr3 (240-291)||(10943669-10943720)
chr3 (240-305)||(24253846-24253911)
chr3 (191-279)||(37102155-37102243)
chr3 (240-291)||(17474261-17474312)
chr3 (220-291)||(26135935-26136006)
chr3 (255-314)||(55428494-55428553)
chr3 (195-279)||(30200098-30200182)
chr3 (242-314)||(42699669-42699741)
chr3 (262-314)||(44412476-44412528)
chr3 (262-314)||(46978542-46978594)
[»] chr1 (9 HSPs)
chr1 (220-314)||(35512912-35513006)
chr1 (192-308)||(47071172-47071288)
chr1 (220-314)||(1085524-1085619)
chr1 (221-314)||(25268379-25268472)
chr1 (197-314)||(33643383-33643499)
chr1 (255-314)||(13386989-13387048)
chr1 (240-314)||(2506654-2506728)
chr1 (262-314)||(51303461-51303513)
chr1 (240-314)||(35927928-35928001)
[»] scaffold0007 (1 HSPs)
scaffold0007 (220-314)||(242331-242425)
[»] chr2 (17 HSPs)
chr2 (242-314)||(35325384-35325456)
chr2 (243-314)||(45098284-45098355)
chr2 (216-308)||(36052118-36052210)
chr2 (255-314)||(15085770-15085829)
chr2 (228-306)||(9313110-9313188)
chr2 (255-305)||(34187701-34187751)
chr2 (241-314)||(31061474-31061547)
chr2 (221-314)||(42813735-42813828)
chr2 (255-306)||(8554369-8554420)
chr2 (240-314)||(45257422-45257496)
chr2 (241-306)||(1052811-1052876)
chr2 (259-314)||(3094427-3094482)
chr2 (231-314)||(42296349-42296432)
chr2 (222-278)||(14187111-14187167)
chr2 (259-291)||(22356141-22356173)
chr2 (262-314)||(31928121-31928173)
chr2 (262-314)||(33265721-33265773)
[»] chr6 (9 HSPs)
chr6 (222-314)||(31799036-31799128)
chr6 (241-308)||(9051590-9051657)
chr6 (255-314)||(15323340-15323399)
chr6 (255-314)||(15353478-15353537)
chr6 (255-314)||(15373669-15373728)
chr6 (220-314)||(10293363-10293457)
chr6 (220-314)||(34176606-34176700)
chr6 (255-308)||(4097305-4097358)
chr6 (259-314)||(26318420-26318475)
[»] scaffold0026 (1 HSPs)
scaffold0026 (255-314)||(1467-1526)
[»] scaffold0012 (1 HSPs)
scaffold0012 (240-298)||(184738-184796)
[»] scaffold0071 (1 HSPs)
scaffold0071 (190-314)||(53000-53122)
[»] scaffold0240 (1 HSPs)
scaffold0240 (240-314)||(17655-17729)
[»] scaffold1414 (1 HSPs)
scaffold1414 (258-305)||(425-473)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 44146152 - 44145846
Alignment:
Q  8 aaatatgaatatgaattacaaacaatcaaaagaagagattgggatgcccaacaaaataagtcttaagctacgagaattcacaagaaagttggtaagatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  44146152 aaatatgaatatgaattacaaacaatcaaaagaagagattgggatgcccaacaaaagaagtcttaagctaagagaattcacaagaaagttggtaagatca 44146053  T
Q  108 atagaatgtggaatatgaatgaaaagtagatacatgatagtactacttttaattacttatattaattctttttgacttactttattaagggtgtgtttgg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44146052 atagaatgtggaatatgaatgaaaagtagatacatgatagtactacctttaattacttatattaattctttttgacttactttattaagggtgtatttgg 44145953  T
Q  208 gaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatca 307  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  44145952 aaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcattataaatgatca 44145853  T
Q  308 tgtaata 314  Q
    |||||||    
T  44145852 tgtaata 44145846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 44155919 - 44156052
Alignment:
Q  8 aaatatgaatatgaattacaaacaatcaaaagaagagattgggatgcccaacaaaataagtcttaagctacgagaattcacaagaaagttggtaagatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  44155919 aaatatgaatatgaattacaaacaatcaaaagaagagattgggatgcccaacaaaagaagtcttaagctacgagaattcacaagaaagttggtaaaatca 44156018  T
Q  108 atagaatgtggaatatgaatgaaaagtagataca 141  Q
     || |||| ||||||||||| |||||||||||||    
T  44156019 ctaaaatggggaatatgaattaaaagtagataca 44156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 43961644 - 43961525
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 294  Q
    |||||||||||||   ||||| ||| ||||||||||||||  || ||||||||| |||   |||||||||||||||||||| |||||||||||| || ||    
T  43961644 agggtgtgtttggatggagggattatgaggggagggcttatttttcttttttaaattatgaacattataaaatgatttttagaaaattgaattatcaaca 43961545  T
Q  295 tgatcaatgatcatgtaata 314  Q
    |||| ||||||||| |||||    
T  43961544 tgataaatgatcatataata 43961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 55080815 - 55080700
Alignment:
Q  193 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacag 292  Q
    |||||||||||||||   |||||||||||| |||||| ||||| || ||||||||| |||   |||||||||||| ||||||| |||||| ||||||||     
T  55080815 taagggtgtgtttggatggagggtttaggatgggaggacttacttttcttttttaaattacgaacattataaaataatttttagaaaatttaattaacaa 55080716  T
Q  293 catgatcaatgatcat 308  Q
    |||||| |||||||||    
T  55080715 catgataaatgatcat 55080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 22186950 - 22186834
Alignment:
Q  198 gtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatga 297  Q
    ||||||||||   |||||||||  |||||||| || || || ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||    
T  22186950 gtgtgtttggatggagggtttaaaaggggaggactcacttttcttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 22186851  T
Q  298 tcaatgatcatgtaata 314  Q
    | |||||| || |||||    
T  22186850 taaatgattatataata 22186834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 37761673 - 37761588
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    |||||||||||||| | || ||||||||| |||  |||||||| |||||||||||| ||||||||||||||| |||||| ||||||    
T  37761673 ggaggggagggcttccttttcttttttaaattatggacattatgaaatgatttttagaaaattgaattaacaacatgataaatgat 37761588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 5825085 - 5825017
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  5825085 cttttttgaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 5825017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 4437480 - 4437554
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||    
T  4437480 cttttttaaattatggatattataaaatgatttttaaaaaattgaattaacaacatgataattgatcatataata 4437554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 54576362 - 54576456
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||| || ||||||||  |||  |||||||||||||||||| || ||||||||||||||| | |||| |||||| || |||||    
T  54576362 ggaggggagggcttacttttcttttttagattacggacattataaaatgatttatagaaaattgaattaacaacgtgataaatgattatataata 54576456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 17182490 - 17182614
Alignment:
Q  192 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgattttt--aaaaaattgaattaa 289  Q
    |||| |||||||||||  ||||| |||||||||||| |  |||| || ||||||||| |||  ||| ||||||||||||||||   ||||||||||||||    
T  17182490 ttaaaggtgtgtttggatagaggttttaggaggggaagatttacttttcttttttaaattattgacgttataaaatgattttttgcaaaaattgaattaa 17182589  T
Q  290 cagcatgatcaatgatcatgtaata 314  Q
    ||  ||||| ||||||||| |||||    
T  17182590 caatatgataaatgatcatataata 17182614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 44156147 - 44156207
Alignment:
Q  141 atgatagtactacttttaattacttatattaattctttttgacttactttattaagggtgt 201  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  44156147 atgatagtattacctttaattacttatattaattctctttgacttattttattaagagtgt 44156207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 51075268 - 51075218
Alignment:
Q  258 attataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  51075268 attataaaataatttttaaaaaattgaattaacaacatgataaatgatcat 51075218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 56135965 - 56135905
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaag 255  Q
    |||||||||||||   ||||||||||||||||||||||||| || ||||||||| ||||||    
T  56135965 agggtgtgtttggatggagggtttaggaggggagggcttacttttcttttttaaattaaag 56135905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 7977530 - 7977625
Alignment:
Q  220 ggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||| || ||||||| || |||   |||||||||||| || |||  ||||||||||||||| |||||| ||||||||| |||||    
T  7977530 ggaggggagggcttacttttctttttttaaattacgaacattataaaataatattttgaaaattgaattaacaacatgataaatgatcatataata 7977625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 54001162 - 54001232
Alignment:
Q  241 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||| |||  ||||||||||||| |||||||||||||||||||||   |||||| ||||||||| |||||    
T  54001162 ttttttaaattacggacattataaaataatttttaaaaaattgaattaa---catgataaatgatcatataata 54001232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 21694929 - 21695018
Alignment:
Q  224 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||| || ||||||||| |||  |||| ||||||||| ||||||| |||||||| |||||  ||||| ||||||||| |||||    
T  21694929 gggagggcttacttttcttttttaaattacggacactataaaatggtttttaataaattgaaataacaaaatgat-aatgatcatataata 21695018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 29993826 - 29993884
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||| |||  |||| |||||||||||||||| ||||||||||||||| ||||||    
T  29993826 cttttttaaattacggacactataaaatgatttttagaaaattgaattaacaacatgat 29993884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 47846090 - 47846184
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| | |||| || ||||||||| ||   ||||||||||||| ||||||| ||||||||||||| | |||||| ||| ||||| |||||    
T  47846090 ggaggggagagtttacttttcttttttaaattctggacattataaaataatttttacaaaattgaattaagaacatgataaataatcatataata 47846184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 11089756 - 11089637
Alignment:
Q  192 ttaagggtgtgtttgggaagagggtttaggaggggagg---gcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatta 288  Q
    ||||||||||||||||   |||| ||||| |||||| |   | ||||||| ||||||||| |||  ||| |||||||||  |||||| ||||||||||||    
T  11089756 ttaagggtgtgtttggattgaggatttagaaggggaagatggtttacatttcttttttaaattacggactttataaaatattttttagaaaattgaatta 11089657  T
Q  289 acagcatgatcaatgatcat 308  Q
    ||| ||| || |||||||||    
T  11089656 acaacatcataaatgatcat 11089637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 35543333 - 35543411
Alignment:
Q  211 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 289  Q
    ||||||||| || |||||  ||||  || ||||||||| |||   |||||||||||| |||||||||||||||||||||    
T  35543333 gagggtttaagaagggagaacttatttttcttttttaaattaggaacattataaaataatttttaaaaaattgaattaa 35543411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 9030391 - 9030331
Alignment:
Q  254 agacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||||||||| |||||| |||||| |  ||||| |||||| || |||||    
T  9030391 agacattataaaatgatttttagaaaatttaattaataaaatgataaatgattatataata 9030331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 11842325 - 11842401
Alignment:
Q  201 tgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaa 277  Q
    |||||||  ||||||||||| |||||||| ||||| || |||||| || ||| ||||| ||||||||  ||||||||    
T  11842325 tgtttggatagagggtttagaaggggaggacttacttttctttttcaaattacagacactataaaatattttttaaa 11842401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 39449546 - 39449419
Alignment:
Q  192 ttaagggtgtgtttgggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaat 286  Q
    |||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  39449546 ttaagggtgtgtttgggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaat 39449447  T
Q  287 taacagcatgatcaatgatcatgtaata 314  Q
    ||||| |||||| ||||||||| |||||    
T  39449446 taacaacatgattaatgatcatataata 39449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 12022178 - 12022272
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||| || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  12022178 ggaggggagggcttacttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataata 12022272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 20472702 - 20472821
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 294  Q
    |||||||||||||  |||||| ||| ||||| ||||||||| || ||||||||| ||| |||||||||||||| | ||||| |||||||||||||||  |    
T  20472702 agggtgtgtttggatagagggattaagagggaagggcttacttttcttttttaaattacagacattataaaataaattttagaaaattgaattaacaata 20472801  T
Q  295 tgatcaatgatcatgtaata 314  Q
    ||||  |||||||| |||||    
T  20472802 tgatatatgatcatataata 20472821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 9933454 - 9933356
Alignment:
Q  216 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||| |||| || |||||||||  |   ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||    
T  9933454 tttaggaggggagggtttacttttcttttttaaaatttggacattataaaatgattttaaaaaaattgaattaacaacatgataaatgatcatataata 9933356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 30365339 - 30365254
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    |||||||||||||| | || ||||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||||| ||||||    
T  30365339 ggaggggagggcttccttttcttttttaaattacagacattatgaaatgatttttagaaaattgaattaacaacatgataaatgat 30365254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 43732896 - 43732802
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  |||||||||||||||  ||||| ||||||||| |||||    
T  43732896 ggaggggagggtttacttttcttttttaaattacggacattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataata 43732802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 16024341 - 16024269
Alignment:
Q  242 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  16024341 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataata 16024269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 29937676 - 29937617
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  29937676 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataata 29937617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 34196514 - 34196424
Alignment:
Q  223 ggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||| || |||||| |||| | |||||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||||    
T  34196514 ggggagggcttacttttctttttaaatt-acagacattataaaatgatttttagaaaattgaattaacaacaagataaacgatcatataata 34196424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 8815187 - 8815270
Alignment:
Q  231 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||| || ||||||||| |||  ||||||||||||||||||||| |||||||||| |||| |||||| |||||| || |||||    
T  8815187 cttacttttcttttttaaattacggacattataaaatgatttttagaaaattgaatcaacaacatgataaatgattatataata 8815270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 40633059 - 40633109
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  40633059 gacattataaaataatttttagaaaattgaattaacaacatgataaatgat 40633109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 8671849 - 8671898
Alignment:
Q  242 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  8671849 tttttaaattacggacattataaaatgatttttagaaaattgaattaaca 8671898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 9434377 - 9434428
Alignment:
Q  263 aaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| || |||||    
T  9434377 aaaataatttttaaaaaattgaattaacaacatgataaatgataatataata 9434428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 43826500 - 43826453
Alignment:
Q  261 ataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    ||||||| ||||||| ||||||||||||||| |||||| |||||||||    
T  43826500 ataaaataatttttagaaaattgaattaacaacatgataaatgatcat 43826453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 6453356 - 6453315
Alignment:
Q  257 cattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||||||||||||| ||||||||||||| | ||||||    
T  6453356 cattataaaatgatttttagaaaattgaattaataacatgat 6453315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 8390 - 8262
Alignment:
Q  192 ttaagggtgtgttt-gggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaa 285  Q
    |||||||||||||| |||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8390 ttaagggtgtgtttagggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaa 8291  T
Q  286 ttaacagcatgatcaatgatcatgtaata 314  Q
    |||||| |||||| ||||||||| |||||    
T  8290 ttaacaacatgattaatgatcatataata 8262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 33519257 - 33519163
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||| |||| || ||| ||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  33519257 ggaggggagggattacttttcttctttaaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataata 33519163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 48013740 - 48013624
Alignment:
Q  192 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||||||||||||   ||||| |||||||||||| |||||| || | ||||||| | | |||| ||||||||| ||||||| |||||||||||||||    
T  48013740 ttaagggtgtgtttggatggagggattaggaggggagagcttacttttcgtttttaaatcacagactttataaaataatttttagaaaattgaattaaca 48013641  T
Q  292 gcatgatcaatgatcat 308  Q
     |||||| |||||||||    
T  48013640 acatgataaatgatcat 48013624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 23116269 - 23116389
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaa-tgatttttaaaaaattgaattaacagc 293  Q
    |||||||||||||   |||||||||||| |||||||||||| || ||||||||| ||| ||||| ||||||| || || ||||||||||||| || || |    
T  23116269 agggtgtgtttggatggagggtttaggaagggagggcttacttttcttttttaaattacagacactataaaagtgtttattaaaaaattgaaatagcaac 23116368  T
Q  294 atgatcaatgatcatgtaata 314  Q
    ||||| |||||| || |||||    
T  23116369 atgataaatgattatataata 23116389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 39646687 - 39646600
Alignment:
Q  211 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||||||||||| | || || ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| ||||||    
T  39646687 gagggtttaggaggggatgactcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 39646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 28074158 - 28074232
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||    
T  28074158 cttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacctgataaatgatcatataata 28074232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 36267588 - 36267682
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||  || ||||||||| |||  || |||||||||||||||||| |||||||||| ||||  ||||| ||||||||| |||||    
T  36267588 ggaggggagggcttagttttcttttttaaattacggatattataaaatgatttttagaaaattgaatcaacaatatgataaatgatcatataata 36267682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 21857560 - 21857468
Alignment:
Q  215 gtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||||||| |||| ||||| || || ||||||||   | |||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  21857560 gtttaggaggagaggacttacttttctcttttaattacga-acattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 21857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 30592292 - 30592353
Alignment:
Q  224 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaa 285  Q
    |||||||||||| || ||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  30592292 gggagggcttacttttcttttttaaattacagacactataaaatgatttttaaaaaattgaa 30592353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 48881593 - 48881678
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    |||||||| ||||||| || ||||||||| |||  ||||||||||||| ||||| | ||||||||||||||| |||||| ||||||    
T  48881593 ggaggggatggcttacttttcttttttaaattacggacattataaaataattttcagaaaattgaattaacaacatgataaatgat 48881678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 3143673 - 3143624
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 289  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  3143673 cttttttaaattaatgacattataaaataatttttaaaaaattgaattaa 3143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 3215934 - 3215989
Alignment:
Q  259 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||||||| |||||    
T  3215934 ttataaaatgatttttagaaaattgaattaacaatatgataaatgatcatataata 3215989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 48015394 - 48015323
Alignment:
Q  242 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaat 313  Q
    ||||||| ||| |||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||| ||||    
T  48015394 tttttaaattacagactttataaaataatttttggaaaattgaattaacaacatgataaatgatcatataat 48015323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 37620983 - 37620905
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||||| || | || ||||||||| |||  ||||||||||||||||||||  |||||||||||| || ||||||    
T  37620983 ggaggggagggtttgcttttcttttttaaattatggacattataaaatgatttttggaaaattgaattatcaacatgat 37620905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 16833867 - 16833810
Alignment:
Q  257 cattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||| || ||||||| ||||||||||||| | |||||| |||||||||||||||    
T  16833867 cattataatataatttttataaaattgaattaataacatgataaatgatcatgtaata 16833810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 8122328 - 8122264
Alignment:
Q  249 tttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaat 313  Q
    |||| |||||||||||||| ||||||| |||||||||||||||  ||||| ||| ||||| ||||    
T  8122328 tttatagacattataaaataatttttagaaaattgaattaacaagatgataaattatcatataat 8122264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 2087785 - 2087852
Alignment:
Q  231 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||| || ||||||||| |||  || |||||||||| |||||||||||| |||||||||| ||||||    
T  2087785 cttacttttcttttttaaattacggatattataaaataatttttaaaaaaatgaattaacaacatgat 2087852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 17853106 - 17853051
Alignment:
Q  193 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaa 248  Q
    |||||||||||||||   ||||||||||||||||||||||||| || | |||||||    
T  17853106 taagggtgtgtttggatggagggtttaggaggggagggcttacttttcatttttaa 17853051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 35422168 - 35422085
Alignment:
Q  225 ggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||| |||| || |||||| || |||  ||||||||||||| ||||||| ||||||||||||||| ||| || ||| |||||    
T  35422168 ggagggtttacttttctttttaaaattacggacattataaaataatttttagaaaattgaattaacaacataataaataatcat 35422085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 37926015 - 37925972
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||    
T  37926015 gacattataaaatgatgtttagaaaattgaattaacaacatgat 37925972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 31364080 - 31364146
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaat 286  Q
    ||||||||| |||||| || ||||| ||| |||  ||||||||||||||||||| | ||||||||||    
T  31364080 ggaggggagagcttacttttcttttctaaattacggacattataaaatgattttaagaaaattgaat 31364146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 10204785 - 10204691
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||| | | || ||||||||| |||||    
T  10204785 ggaggggaggacttacttttcttttttaatttacagacattaaaaaatgatttttaaaaaattgaattaacaacgtaataaatgatcatataata 10204691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 33744228 - 33744316
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| |||||| |||||||||    
T  33744228 ggaggggagggtttacttttcttttttaaattatggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcat 33744316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 15986659 - 15986730
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    |||||||||| ||||  || ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  15986659 ggaggggaggacttaattttcttttttaatttacagacattataaaatgacttttaaaaaattgaattaaca 15986730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 40305670 - 40305788
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggagggga-----gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 289  Q
    |||||||||||||   |||||||||||||||||     |||||||  || ||||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  40305670 agggtgtgtttggatggagggtttaggaggggaagggagggcttagttttcttttttaaattacagacattataaaataatttttagaaaattgaattaa 40305769  T
Q  290 cagcatgatcaatgatcat 308  Q
    ||  ||||| |||||||||    
T  40305770 caatatgataaatgatcat 40305788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 8551427 - 8551547
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggagggga-gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 293  Q
    |||||||||||||  ||||||||||  |||| | ||| |||||||  ||| ||||  || ||||||||||||||||||||||||||||| |||||||| |    
T  8551427 agggtgtgtttggatagagggtttaatagggaaagggtttacatttatttcttaaactacagacattataaaatgatttttaaaaaattaaattaacaac 8551526  T
Q  294 atgatcaatgatcatgtaata 314  Q
    || || ||||||||| |||||    
T  8551527 attataaatgatcatataata 8551547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 34981019 - 34980925
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||| ||||| || ||||||||| |||  |||||||||||||||||| || |||||||| |||||| |||||| |||||| || |||||    
T  34981019 ggaggggaggacttacttttcttttttaaattatggacattataaaatgatttatagaaaattgagttaacaacatgataaatgattatataata 34980925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 6382525 - 6382446
Alignment:
Q  231 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 310  Q
    ||||| || ||||| |||||||  |||||||||||||  |||||| ||||||||||||||| |||||| |||| ||||||    
T  6382525 cttacttttcttttctaatttacggacattataaaatactttttagaaaattgaattaacaacatgataaatgttcatgt 6382446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 6597845 - 6597919
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| |||  |||||| |||||||||||||  ||||||||| ||||| |||||| ||||||||| |||||    
T  6597845 cttttttaaattacggacattgtaaaatgattttttgaaaattgaaataacaacatgataaatgatcatataata 6597919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 10043461 - 10043367
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||| || || || ||||||||| |||   | |||||||||||||||||| ||||||||||||||| ||| || ||| ||||| |||||    
T  10043461 ggaggggaggactcacttttcttttttaaattacgaatattataaaatgatttttagaaaattgaattaacaacattataaataatcatataata 10043367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 40858798 - 40858680
Alignment:
Q  196 gggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcat 295  Q
    ||||||||||||   |||||||||||||||||||| |||  || ||||||||| |||  |||||||||||||||| |||  ||||||||||||||| |||    
T  40858798 gggtgtgtttggatggagggtttaggaggggagggtttagttttcttttttaaattacggacattataaaatgatcttttgaaaattgaattaacaacat 40858699  T
Q  296 gatcaatgatcatgtaata 314  Q
    ||| ||||||||| |||||    
T  40858698 gataaatgatcatataata 40858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 34641199 - 34641107
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||| || ||||||||| |||  |||||||||||||||  |||| ||||||||||||||| |||||| ||||||||| |||||    
T  34641199 ggaggggagggcttacttttcttttttaaattacggacattataaaatga--tttagaaaattgaattaacaacatgataaatgatcatataata 34641107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 42772250 - 42772147
Alignment:
Q  211 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 310  Q
    ||||||||||||||||| || |||| || ||| || || |||  ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||| |    
T  42772250 gagggtttaggaggggaaggtttactttgcttcttaaaattacggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatat 42772151  T
Q  311 aata 314  Q
    ||||    
T  42772150 aata 42772147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 48683848 - 48683727
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattc-cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 293  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||  ||||||||| |||   ||||||||||||||||||||  |||||||||||||| |    
T  48683848 agggtgtgtttggatagagggtttaggaggggagggtttattttttcttttttaaattacgaacattataaaatgatttttaggaaattgaattaacaac 48683749  T
Q  294 a-tgatcaatgatcatgtaata 314  Q
    | |||| ||||||||| |||||    
T  48683748 attgataaatgatcatataata 48683727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 41414313 - 41414193
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagc 293  Q
    |||||||||||||   | |||||||||||||||| | |||| || ||||||| || | |  ||||||||||||||||||||| |||||||| |||||| |    
T  41414313 agggtgtgtttggatggtgggtttaggaggggagtgtttacttttctttttttaaatcagggacattataaaatgatttttagaaaattgagttaacaac 41414214  T
Q  294 atgatcaatgatcatgtaata 314  Q
    ||||| ||||||||| |||||    
T  41414213 atgataaatgatcatataata 41414193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 18086019 - 18086086
Alignment:
Q  224 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||| |||||| || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||    
T  18086019 gggagagcttacttttcttttttaaattacagacattataaaatgttttttagaaaattgaattaaca 18086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 8432297 - 8432372
Alignment:
Q  221 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||| ||||| ||  |||||| | ||| |||||||||||||||||||||| ||||||||||||||| ||||||    
T  8432297 gaggggaggacttacttt--tttttttaattacagacattataaaatgatttttacaaaattgaattaacaacatgat 8432372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 16884010 - 16884100
Alignment:
Q  222 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||| ||||||||||||| | | | |||||||  | ||||||||||||||| ||||| |||||| ||||||||| |||||    
T  16884010 aggggagggcttacatttcttttttaatttacaaata-tataaaaaaaattttaaaaaattgaa-taacaacatgataaatgatcatataata 16884100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 54985696 - 54985812
Alignment:
Q  188 tttattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatt 287  Q
    |||| |||| ||||||||||   |||||||||| ||| ||| |||||  || | ||||||| |||  ||||||||||| ||||||||| |||||||||||    
T  54985696 tttactaagagtgtgtttggattgagggtttagaaggagagagcttagttttcgtttttaaattacggacattataaattgatttttagaaaattgaatt 54985795  T
Q  288 aacagcatgatcaatga 304  Q
    ||||  ||||| |||||    
T  54985796 aacaatatgataaatga 54985812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 10943669 - 10943720
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||||| ||| ||| |||||||||||||||||| |||||||||||||||    
T  10943669 cttttttaaattatagatattataaaatgatttttagaaaattgaattaaca 10943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 24253911 - 24253846
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    ||||||||| |||  ||||||||||||||| ||||| ||| ||||||||||| |||||| ||||||    
T  24253911 cttttttaaattacggacattataaaatgagttttagaaagttgaattaacaacatgataaatgat 24253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 37102155 - 37102243
Alignment:
Q  191 attaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 279  Q
    |||||||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  37102155 attaagggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 37102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 17474261 - 17474312
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||||| |||  ||||||||||||| |||||| ||||||||||||||||    
T  17474261 cttttttaaattacggacattataaaataattttttaaaaattgaattaaca 17474312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 26136006 - 26135935
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    |||| |||||| |||| || ||||||||| |||  ||||||||||||| ||||||  |||||||||||||||    
T  26136006 ggagtggagggtttacttttcttttttaaattacggacattataaaataattttttgaaaattgaattaaca 26135935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 55428553 - 55428494
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| || |||||||||| ||||||||||||||| | |||| ||||||||| |||||    
T  55428553 gacattacaagatgatttttagaaaattgaattaacaacgtgataaatgatcatataata 55428494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 30200098 - 30200182
Alignment:
Q  195 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 279  Q
    |||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  30200098 agggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 30200182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 42699669 - 42699741
Alignment:
Q  242 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| |||  ||||||||||||| | ||||| |||||||||||| ||  ||||| ||||||||| |||||    
T  42699669 tttttaaattatggacattataaaataaattttagaaaattgaattatcaatatgataaatgatcatataata 42699741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 44412528 - 44412476
Alignment:
Q  262 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||  ||||||||||||||| |||||| ||| ||||| |||||    
T  44412528 taaaatgattttttgaaaattgaattaacaacatgataaatcatcatataata 44412476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 46978594 - 46978542
Alignment:
Q  262 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||| |||||| |||||||| |||||| |||||| || |||||    
T  46978594 taaaatgatttttataaaatttaattaacaacatgataaatgattatataata 46978542  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 35513006 - 35512912
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||||| ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  35513006 ggaggggagggcttacttttattttttaaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataata 35512912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 47071288 - 47071172
Alignment:
Q  192 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||||||||||||    ||||||||||| |||| | || || || ||||||||| |||  ||||||||||||||||||||| |||||| ||||||||    
T  47071288 ttaagggtgtgtttggatgaagggtttaggaagggaagactaacttttcttttttaaattacggacattataaaatgatttttagaaaatttaattaaca 47071189  T
Q  292 gcatgatcaatgatcat 308  Q
     |||||| |||||||||    
T  47071188 acatgataaatgatcat 47071172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 1085524 - 1085619
Alignment:
Q  220 ggaggggagggcttacatt-ccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||| ||||| || |||||||||| |||  ||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| |||||    
T  1085524 ggaggggaggacttacttttccttttttaaattacggacattagaaaatgatttttagaaaattgaactaacagcatgataaatgatcatataata 1085619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 25268472 - 25268379
Alignment:
Q  221 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||| |||| |||||||||||| |||  || |||||||||||||||||| |||||| ||| |||| | |||| ||||||||| |||||    
T  25268472 gaggggagggtttactttccttttttaaattacggaaattataaaatgatttttagaaaatttaatcaacaacgtgataaatgatcatataata 25268379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 33643499 - 33643383
Alignment:
Q  197 ggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatg 296  Q
    |||||||||||  |||||||||||||||||||   ||| ||| ||||||||| |||   ||||| |||||||||||||| ||||||||||||| |  |||    
T  33643499 ggtgtgtttggatagagggtttaggaggggagaattta-atttcttttttaaattatgaacattttaaaatgatttttagaaaattgaattaataatatg 33643401  T
Q  297 atcaatgatcatgtaata 314  Q
    || ||||||||| |||||    
T  33643400 atgaatgatcatataata 33643383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 13386989 - 13387048
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||| |||||| |||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  13386989 gacatcataaaacgatttttagaaaattgaattaacaacatgataaatgatcatataata 13387048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 2506728 - 2506654
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||| |||||||||  || || ||||||||| |||||    
T  2506728 cttttttaaattacagatattataaaataatttttaaaaaatcgaattaacaatataataaatgatcatataata 2506654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 51303461 - 51303513
Alignment:
Q  262 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||  ||||||||||||||| |||||| ||||||||| |||||    
T  51303461 taaaatgatttttttaaaattgaattaacaacatgataaatgatcatataata 51303513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 35928001 - 35927928
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| ||| |||  ||||||||| ||||| | ||||||||||||||| |||||| ||||||||| |||||    
T  35928001 cttttttaaattacagattttataaaataatttt-agaaaattgaattaacaacatgataaatgatcatataata 35927928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 242425 - 242331
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||||||||||||||||||  |||||| |||||| || |||||    
T  242425 ggaggggagggtttacttttcttttttaaattacggacattataaaatgatttttaaaaaattgaattaacgacatgataaatgatgatataata 242331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 35325456 - 35325384
Alignment:
Q  242 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||| |||||    
T  35325456 tttttaaattaacgacattataaaataatttttaaaaaattgaattaataacatgataaatgatcatataata 35325384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45098355 - 45098284
Alignment:
Q  243 ttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||| |||||    
T  45098355 ttttaaattacagacattataaaatggtttttgaaaaattgaattaacaacatgataaatgatcatataata 45098284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 36052118 - 36052210
Alignment:
Q  216 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||||||||| | ||||| || || |||||| ||| | |||||||||||||||||||| ||||||||||||||| ||| ||  ||||||||    
T  36052118 tttaggaggggacgacttacttttctattttaaattacatacattataaaatgatttttagaaaattgaattaacaacatcatacatgatcat 36052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 15085770 - 15085829
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||    
T  15085770 gacattataaaatgatttttagaaaattgaattaacaacttgataaatgatcatataata 15085829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 9313188 - 9313110
Alignment:
Q  228 gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 306  Q
    |||||||| || | ||||||| ||| |||||||||||||||||||||  ||||||||||||||| | |||| |||||||    
T  9313188 gggcttacttttcctttttaaattacagacattataaaatgatttttcgaaaattgaattaacaacttgataaatgatc 9313110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 34187751 - 34187701
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 305  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  34187751 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgat 34187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 31061547 - 31061474
Alignment:
Q  241 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||| ||| |||||||||||| ||| ||||  ||||||||||||||| |||||| ||||||||| |||||    
T  31061547 ttttttaaattacagacattataaagtgactttttgaaaattgaattaacaacatgataaatgatcatataata 31061474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 42813828 - 42813735
Alignment:
Q  221 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| ||||||  || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| | |||| ||| ||||| |||||    
T  42813828 gaggggatggcttatttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacctgataaataatcatataata 42813735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 8554369 - 8554420
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 306  Q
    ||||||||||||| |||||| |||||||||||||||| |||||| |||||||    
T  8554369 gacattataaaataattttttaaaaattgaattaacatcatgataaatgatc 8554420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 45257496 - 45257422
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| |||  || |||||||||||||||||  |||||||||||||||  ||||| ||||||||| |||||    
T  45257496 cttttttaaattacggatattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataata 45257422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 1052811 - 1052876
Alignment:
Q  241 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 306  Q
    |||||||| |||  || |||||||||| ||||||| ||||||||||||||| |||||| |||||||    
T  1052811 ttttttaaattatcgatattataaaataatttttagaaaattgaattaacaacatgataaatgatc 1052876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 3094427 - 3094482
Alignment:
Q  259 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| |||||    
T  3094427 ttataaaatgattcttagaaaattgaattaacaacatgataaataatcatataata 3094482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 42296349 - 42296432
Alignment:
Q  231 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||| || ||||||||| |||  || |||||||||||| ||||| |||| |||||||||| ||| || ||||||||| |||||    
T  42296349 cttacttttcttttttaaattacggatattataaaatgaattttagaaaaatgaattaacaacataataaatgatcatataata 42296432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 14187111 - 14187167
Alignment:
Q  222 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaa 278  Q
    |||||||||||||| || ||||||||| ||| | ||||||||||||| |||| ||||    
T  14187111 aggggagggcttacttttcttttttaaattataaacattataaaatgtttttgaaaa 14187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 22356173 - 22356141
Alignment:
Q  259 ttataaaatgatttttaaaaaattgaattaaca 291  Q
    ||||||||||||||||| |||||||||||||||    
T  22356173 ttataaaatgatttttagaaaattgaattaaca 22356141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 31928121 - 31928173
Alignment:
Q  262 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||  ||||||||||||| | |||||| ||||||||| |||||    
T  31928121 taaaatgatttttttaaaattgaattaataacatgataaatgatcatataata 31928173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 33265773 - 33265721
Alignment:
Q  262 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||| |||||    
T  33265773 taaaatgattttttgaaaattgaattaacaatatgataaatgatcatataata 33265721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 31799128 - 31799036
Alignment:
Q  222 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||| | |||| || ||||||||| |||  || |||||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||    
T  31799128 aggggagagtttacttttcttttttaaattacggatattataaaataattttttaaaaattgaattaacaacatgataaatgatcatataata 31799036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 9051590 - 9051657
Alignment:
Q  241 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||||| |||  || |||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  9051590 ttttttaaattacggatattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 9051657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 15323399 - 15323340
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| |||||    
T  15323399 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataata 15323340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 15353537 - 15353478
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||| |||||    
T  15353537 gacattataaaatgatttttagaaaattgaattaacaacattataaatgatcatataata 15353478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 15373669 - 15373728
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| |||||    
T  15373669 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataata 15373728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 10293457 - 10293363
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| |||||| || |||||| || ||| ||| |||||||||||||||||| |||| |||||| ||| ||| || ||| ||||| |||||    
T  10293457 ggaggggagagcttacttttctttttcaaattacagatattataaaatgatttttagaaaactgaattgacaacatcataaataatcatataata 10293363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 34176606 - 34176700
Alignment:
Q  220 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    |||||||| | ||||| || ||||||||| |||   | |||||||| |||||||||||||||||||||||||  || || ||||||||| |||||    
T  34176606 ggaggggaagacttacttttcttttttaaattacgaaaattataaattgatttttaaaaaattgaattaacaatataataaatgatcatataata 34176700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 4097305 - 4097358
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 308  Q
    |||||||||||||  |||||| ||||||||||||||| |||||| |||||||||    
T  4097305 gacattataaaatattttttagaaaattgaattaacaacatgataaatgatcat 4097358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 26318475 - 26318420
Alignment:
Q  259 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||||| ||||| ||||||||||||||| |||||| | ||||||| |||||    
T  26318475 ttataaaatgacttttagaaaattgaattaacaacatgataattgatcatataata 26318420  T

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Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 1467 - 1526
Alignment:
Q  255 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||| |||||    
T  1467 gacattatagaatgatttttagaaaattgaattaacaacttgataaatgatcatataata 1526  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 184796 - 184738
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 298  Q
    ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  184796 cttttttaaattatggacattataaaatgatttttttaaaattgaattaacaacatgat 184738  T

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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 53122 - 53000
Alignment:
Q  190 tattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 289  Q
    ||||||||||||||||||   ||||||||||||||  |  |  ||| || ||||||||| |||  | |||||| |||||||||||  ||||||||| |||    
T  53122 tattaagggtgtgtttggatggagggtttaggaggacaatg--tacttttcttttttaaattatgggcattatgaaatgattttttgaaaattgaactaa 53025  T
Q  290 cagcatgatcaatgatcatgtaata 314  Q
    || |||||| ||||||||| |||||    
T  53024 caacatgataaatgatcatataata 53000  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 17729 - 17655
Alignment:
Q  240 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 314  Q
    ||||||||| ||| | | |||||||||||||||||  |||||||||||| || |||||| ||| ||||| |||||    
T  17729 cttttttaaattacaaatattataaaatgattttttgaaaattgaattagcaacatgataaataatcatataata 17655  T

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Target: scaffold1414 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 473 - 425
Alignment:
Q  258 attataaaatgatttttaaaaaatt-gaattaacagcatgatcaatgat 305  Q
    |||||||||||||||||| ||||||  ||||||||||||||| ||||||    
T  473 attataaaatgatttttagaaaattaaaattaacagcatgataaatgat 425  T

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