View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_low_21 (Length: 304)

Name: NF18433_low_21
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_low_21
NF18433_low_21
[»] chr7 (1 HSPs)
chr7 (1-296)||(41735597-41735892)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 41735597 - 41735892
Alignment:
Q  1 cccacacccctcctttctcttccctttcctccgcttctcttctcacaacaaaaaccccaacctcgccaaatccatccacgccacccttctcaaaaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41735597 cccacacccctcctttctcttccctttcctccgcttctcttctcacaacaaaaaccccaacctcgccaaatccatccacgctacccttctcaaaaaccat 41735696  T
Q  101 gaaatacatcatctcaccaccgctctcatttcaacttacatcaacctccgtttcttctcctacgcccaccgtctcctcctctctcaatctccccccaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||     
T  41735697 gaaatacatcatctcaccaccgctctcatttcaacttacatcaacctccgtctcttctcctacgcccaccgtctcttcctctctcaatctccccccaaca 41735796  T
Q  201 tcgtttcttactccgcactcatctccgctttctccaaatcaaaccgtgaaaaacaatcccttttcctcttccttcacatgataacagtttcatctc 296  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735797 tcgtttcttactccgcacttatctccgctttctccaaatcaaaccgtgaaaaacaatcccttttcctcttccttcacatgataacagtttcatctc 41735892  T

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