View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_low_22 (Length: 302)
Name: NF18433_low_22
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 4123176 - 4122883
Alignment:
| Q |
1 |
aaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123176 |
aaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagt |
4123077 |
T |
|
| Q |
101 |
attatatcattgttaaatgattgtgatattagtatttatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
4123076 |
attatatcattgttaaatgattgtgatattagtgtttatttccacttttttacagaatttgactgtcgacgggggtggtagtgttttgctcccctgtgat |
4122977 |
T |
|
| Q |
201 |
aattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttgaagtccctcaagtggaaggacgtagcttgaagatgatgatgt |
294 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4122976 |
aattacccaaattggttaagtttcaactccaaaggttattctgttgtttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatgt |
4122883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 137 - 285
Target Start/End: Original strand, 4362452 - 4362599
Alignment:
| Q |
137 |
tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| |
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| T |
4362452 |
tatttccactttt-tacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgattacccaaattggttaagtttcaacgccaaaggt |
4362550 |
T |
|
| Q |
237 |
tattctgtagtttttgaagtccctcaagtggaaggacgtagcttgaaga |
285 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
4362551 |
tattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaaga |
4362599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 4346265 - 4346403
Alignment:
| Q |
147 |
tttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
4346265 |
tttttacagaatttgactgtcgatgggcgtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgtaa |
4346364 |
T |
|
| Q |
247 |
tttttgaagtccctcaagtggaaggacgtagcttgaaga |
285 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4346365 |
tctttgaagtccctcaagtggaaggacatagcttgaaga |
4346403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 294
Target Start/End: Original strand, 4336802 - 4336958
Alignment:
| Q |
137 |
tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt |
236 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| ||||||||||||| ||||||||| |||||| |
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|
| T |
4336802 |
tatttccactttct-acagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgattacccaaattggttagctttcaactcgaaaggt |
4336900 |
T |
|
| Q |
237 |
tattctgtagtttttgaagtccctcaagtggaaggacgtagcttgaagatgatgatgt |
294 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
4336901 |
tattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatgt |
4336958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 285
Target Start/End: Complemental strand, 4319686 - 4319550
Alignment:
| Q |
149 |
tttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtt |
248 |
Q |
| |
|
|||||||||||||||| |||||| || |||| |||||| ||||| |||||||||| ||| |||||||| |||||| || |||||| ||||||| || |
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|
| T |
4319686 |
tttacagaatttgactatcgatgagcatggtcgtttttcactcccttgtgataattacccggattggttagctttcaattcagaaggttcttctgtaatt |
4319587 |
T |
|
| Q |
249 |
tttgaagtccctcaagtggaaggacgtagcttgaaga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4319586 |
tttgaagtccctcaagtggaaggacgtagcttgaaga |
4319550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 4336662 - 4336751
Alignment:
| Q |
15 |
aatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagtattatat |
107 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||| |||||| | |||||| |
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|
| T |
4336662 |
aatgattgtttcgaaaattggggtgtccaaatatcattgttgtaatttttatttatcaaaatac---taattatcttttgaggaatgttatat |
4336751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 5101119 - 5101057
Alignment:
| Q |
232 |
aaggttattctgtagtttttgaagtccctcaagtggaaggacgtagcttgaagatgatgatgt |
294 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
5101119 |
aaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgt |
5101057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 5136220 - 5136158
Alignment:
| Q |
232 |
aaggttattctgtagtttttgaagtccctcaagtggaaggacgtagcttgaagatgatgatgt |
294 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
5136220 |
aaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgt |
5136158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 5181132 - 5181022
Alignment:
| Q |
175 |
gtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttgaagtccctcaagtggaaggacg |
274 |
Q |
| |
|
||||| ||| ||| |||||| |||||| || ||||||||||||| || || || |||||| ||||||| ||||||||||||| ||||||||||| |
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|
| T |
5181132 |
gtggtggttatttcctccccagtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctttggtggaaggacg |
5181033 |
T |
|
| Q |
275 |
tagcttgaaga |
285 |
Q |
| |
|
|| |||||||| |
|
|
| T |
5181032 |
taacttgaaga |
5181022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 47985778 - 47985657
Alignment:
| Q |
148 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
247 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
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|
| T |
47985778 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47985679 |
T |
|
| Q |
248 |
ttttgaagtccctcaagtggaa |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47985678 |
ttttgaagtccctcaagtggaa |
47985657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 47995065 - 47994944
Alignment:
| Q |
148 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
247 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
47995065 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47994966 |
T |
|
| Q |
248 |
ttttgaagtccctcaagtggaa |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47994965 |
ttttgaagtccctcaagtggaa |
47994944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 48004352 - 48004231
Alignment:
| Q |
148 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
247 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
48004352 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48004253 |
T |
|
| Q |
248 |
ttttgaagtccctcaagtggaa |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48004252 |
ttttgaagtccctcaagtggaa |
48004231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 48013637 - 48013516
Alignment:
| Q |
148 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
247 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
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|
| T |
48013637 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48013538 |
T |
|
| Q |
248 |
ttttgaagtccctcaagtggaa |
269 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48013537 |
ttttgaagtccctcaagtggaa |
48013516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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