View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_low_23 (Length: 295)

Name: NF18433_low_23
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_low_23
NF18433_low_23
[»] chr4 (6 HSPs)
chr4 (11-278)||(45858761-45859021)
chr4 (53-228)||(45876731-45876906)
chr4 (66-197)||(56208539-56208670)
chr4 (59-203)||(47293456-47293600)
chr4 (65-203)||(55705881-55706019)
chr4 (70-178)||(54304249-54304357)
[»] chr5 (3 HSPs)
chr5 (58-203)||(35854542-35854687)
chr5 (127-203)||(35802504-35802580)
chr5 (70-201)||(10521303-10521434)
[»] chr2 (1 HSPs)
chr2 (67-208)||(24357450-24357591)
[»] chr8 (2 HSPs)
chr8 (65-204)||(7972083-7972222)
chr8 (70-203)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 45858761 - 45859021
Alignment:
Q  11 atcatcaaataaatcaacagacatcaaaataaaggtgttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcac 110  Q
    |||| ||||||||||||||||||||||||||   || |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  45858761 atcagcaaataaatcaacagacatcaaaata---gtcttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcac 45858857  T
Q  111 gagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtg 210  Q
    | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  45858858 gtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtg 45858957  T
Q  211 acaagacagtagctgtaagtaactattggatggatatacgagaaggaagaacagaaaacatggaaaat 278  Q
    ||| ||||||||| ||||||||||||    ||||||||| || |||||||||| ||| ||||||||||    
T  45858958 acaggacagtagcggtaagtaactat----tggatatacaaggaggaagaacataaagcatggaaaat 45859021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 45876731 - 45876906
Alignment:
Q  53 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 152  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  153 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaa 228  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||||||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagctgtaa 45876906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  66 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 165  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  166 ccaaaccctcccctgtgcaaccttttccatct 197  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  59 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 158  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  159 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 203  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 203
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  65 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 164  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  165 tccaaaccctcccctgtgcaaccttttccatcttgtcta 203  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  70 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 169  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  170 accctcccc 178  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  58 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 157  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  158 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 203  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  127 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 203  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  70 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 169  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  170 accctcccctgtgcaaccttttccatcttgtc 201  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  67 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 166  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  167 caaaccctcccctgtgcaaccttttccatcttgtctacctag 208  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  65 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 164  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  165 tccaaaccctcccctgtgcaaccttttccatcttgtctac 204  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  70 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 169  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  170 accctcccctgtgcaaccttttccatcttgtcta 203  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University