View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_24 (Length: 292)
Name: NF18433_low_24
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 21652619 - 21652352
Alignment:
| Q |
19 |
tacgagtgctttgaaaatcatagcatacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctnnn |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21652619 |
tacgggtgctttgaaaatcatagcatacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctaaa |
21652520 |
T |
|
| Q |
119 |
nnnnnn---ggaacgattatcatgatagcctaaagaaaataaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagacca |
215 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21652519 |
aaaaaaaaaggaactattatcatgatagcctaatgaaaataaagcctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagacca |
21652420 |
T |
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| Q |
216 |
tacgcggcacaaggaggcaaatctggactaccacaccagcccggtttctcatctgtaattcttctcac |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
21652419 |
tacgcggcacaaggaggcaaatctggactaccacaccagcccggtttctcatctgtaactcttttcac |
21652352 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 40419263 - 40419335
Alignment:
| Q |
43 |
atacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatct |
115 |
Q |
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| T |
40419263 |
atacctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaatct |
40419335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 37456778 - 37456711
Alignment:
| Q |
45 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
112 |
Q |
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| T |
37456778 |
acctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 39263194 - 39263127
Alignment:
| Q |
45 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
112 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| || ||||| |
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| T |
39263194 |
acctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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