View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_25 (Length: 292)
Name: NF18433_low_25
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 32099015 - 32099280
Alignment:
| Q |
19 |
aatctagattactaaggtccctttccctcgataaccagagagttatacaaaaaaggagataaataaaaaacaattaggcatgttgatttgagcccttacg |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099015 |
aatctagattacgaaggtccctttccctcgataaccagagagttatacaaaaagggagataaataaaaaacaattaggcatgttgatttgagcccttacg |
32099114 |
T |
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| Q |
119 |
ttagtggcgtatttgatttcctgaaagcctgttacaaggaaagaaacaaggaaaatgttaagctatacattttgatatcaaatatttctataaaaattgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32099115 |
ttagtggcgtatttgatttcctgaaagcctgttacaaggaaagaaacaaggaaaatgttaagctatacaatttgatatcaaatatttctataaaaattgt |
32099214 |
T |
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| Q |
219 |
tacaatgttaaaatcttaaacaaactagatgttctaggtcaagaaagatgttatcatacctttgct |
284 |
Q |
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| T |
32099215 |
tacaatgttaaaatcttaaacaaactagatgttctaggtcaagaaagatgttatcatacctttgct |
32099280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 32082004 - 32082176
Alignment:
| Q |
113 |
cttacgttagtggcgtatttgatttcctgaaagcctgttacaaggaaagaaacaaggaaaatgttaagctatacattttgatatcaaatatttctataaa |
212 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
32082004 |
cttacgttggtggcgtacttgatttcttgaaagcctgttacaaggaaagaaacaaggaaaatgttaagctatacattttgatttcaaatattttcataaa |
32082103 |
T |
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| Q |
213 |
aattgttacaatgtt-aaaatcttaaacaaactagatgttctaggtcaagaaagatgttatcatacctttgct |
284 |
Q |
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| T |
32082104 |
agttgttagaatgttaaaaatcttaaacaaactagatgttctaggtcaagaaagattttatcatacctttgct |
32082176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 32069962 - 32070132
Alignment:
| Q |
113 |
cttacgttagtggcgtatttgatttcctgaaagcctgttacaaggaaagaaacaaggaaaatgttaagctatacattttgatatcaaatatttctataaa |
212 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
32069962 |
cttacgttggtggcgtacttgatttcctgaaagcctgttacaaggaa-gaaacaaggaaaatgttaagctatacattttgatttcaaatattttcataaa |
32070060 |
T |
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| Q |
213 |
aattgttacaatgttaaaatcttaaacaaactagatgttctaggtcaagaaagatgttatcatacctttgct |
284 |
Q |
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| T |
32070061 |
agttgttagaatgttaaaatcttaaacaaactagatgttttaggtcaagaaagattttatcatacctttgct |
32070132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 32069865 - 32069906
Alignment:
| Q |
69 |
aaaaggagataaataaaaaacaattaggcatgttgatttgag |
110 |
Q |
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| T |
32069865 |
aaaaagagataaataaaaaacaattaggcatgttgatttgag |
32069906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 32081913 - 32081948
Alignment:
| Q |
75 |
agataaataaaaaacaattaggcatgttgatttgag |
110 |
Q |
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| T |
32081913 |
agataaataaaaaacaattaggcatgttgatttgag |
32081948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 32081798 - 32081844
Alignment:
| Q |
19 |
aatctagattactaaggtccctttccctcgataaccagagagttata |
65 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
32081798 |
aatctagattaccaaggtctgtttccctcgataaccagagagttata |
32081844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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