View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_27 (Length: 287)
Name: NF18433_low_27
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_27 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 538 - 749
Alignment:
| Q |
56 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
155 |
Q |
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| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
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| Q |
156 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
255 |
Q |
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| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
734 |
T |
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| Q |
256 |
aggtgtgcattgaac |
270 |
Q |
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| T |
735 |
aggtgtgcattgaac |
749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 8191 - 8402
Alignment:
| Q |
56 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
155 |
Q |
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| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
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| Q |
156 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
255 |
Q |
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| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
8387 |
T |
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| Q |
256 |
aggtgtgcattgaac |
270 |
Q |
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||||||||||||||| |
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| T |
8388 |
aggtgtgcattgaac |
8402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 511 - 554
Alignment:
| Q |
2 |
gagaatgatggcactgatgttggggaaggtgttggtgatggtga |
45 |
Q |
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| T |
511 |
gagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 8164 - 8207
Alignment:
| Q |
2 |
gagaatgatggcactgatgttggggaaggtgttggtgatggtga |
45 |
Q |
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| T |
8164 |
gagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
8207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 6506513 - 6506724
Alignment:
| Q |
56 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
155 |
Q |
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| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
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| Q |
156 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
255 |
Q |
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| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
6506709 |
T |
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| Q |
256 |
aggtgtgcattgaac |
270 |
Q |
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| T |
6506710 |
aggtgtgcattgaac |
6506724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 108 - 270
Target Start/End: Complemental strand, 6522161 - 6522005
Alignment:
| Q |
108 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
207 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| ||| |||||| ||||||||||| ||||| |
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| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc |
6522068 |
T |
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| Q |
208 |
tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaac |
270 |
Q |
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| T |
6522067 |
tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaac |
6522005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 6512451 - 6512631
Alignment:
| Q |
84 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct |
183 |
Q |
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| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagc------acccaacct |
6512544 |
T |
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| Q |
184 |
attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaac |
270 |
Q |
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| T |
6512545 |
gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaac |
6512631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 268
Target Start/End: Original strand, 6516855 - 6517028
Alignment:
| Q |
89 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt |
188 |
Q |
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| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagc------actcatcctgttgt |
6516948 |
T |
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| Q |
189 |
cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattga |
268 |
Q |
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|||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
6516949 |
tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattga |
6517028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6506486 - 6506529
Alignment:
| Q |
2 |
gagaatgatggcactgatgttggggaaggtgttggtgatggtga |
45 |
Q |
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| T |
6506486 |
gagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
6506529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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