View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_29 (Length: 272)
Name: NF18433_low_29
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 2350913 - 2351160
Alignment:
| Q |
7 |
tagataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
106 |
Q |
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| T |
2350913 |
tagatactacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
2351012 |
T |
|
| Q |
107 |
tcatgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
206 |
Q |
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| T |
2351013 |
tcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
2351112 |
T |
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| Q |
207 |
ccggggcataatgtgttaccacacgcggtgacagaggatgtgcttttt |
254 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2351113 |
ccggggcataatgtgttgccacacgcggtgacagaggatgtgcttttt |
2351160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 2303339 - 2303583
Alignment:
| Q |
9 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
108 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
2303339 |
gatactacttccactactttgcaatggattatggcgaatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtg |
2303438 |
T |
|
| Q |
109 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
208 |
Q |
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| T |
2303439 |
gtgatgagaatggagagaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccacc |
2303538 |
T |
|
| Q |
209 |
ggggcataatgtgttaccacacgcggtgacagaggatgtgctttt |
253 |
Q |
| |
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||||||| | |||| ||||||||||||| |||||||||| |||| |
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| T |
2303539 |
ggggcattttctgttgccacacgcggtgaaagaggatgtggtttt |
2303583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 2293743 - 2293970
Alignment:
| Q |
26 |
tttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagag |
125 |
Q |
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|||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
2293743 |
tttgcagtggattatggcgaatgtagtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagag |
2293842 |
T |
|
| Q |
126 |
aaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttac |
225 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| | |
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| T |
2293843 |
aaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgc |
2293942 |
T |
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| Q |
226 |
cacacgcggtgacagaggatgtgctttt |
253 |
Q |
| |
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|||||||||||| |||||||||| |||| |
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| T |
2293943 |
cacacgcggtgaaagaggatgtggtttt |
2293970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 2310081 - 2310301
Alignment:
| Q |
33 |
tggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtgg |
132 |
Q |
| |
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||||||||||| ||| ||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| || |
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| T |
2310081 |
tggattatggcgaatgtggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggagg |
2310180 |
T |
|
| Q |
133 |
aagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgc |
232 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| | | ||| |||||||| |
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| T |
2310181 |
aagtgaaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgc |
2310280 |
T |
|
| Q |
233 |
ggtgacagaggatgtgctttt |
253 |
Q |
| |
|
||||| |||||||||| |||| |
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| T |
2310281 |
ggtgaaagaggatgtggtttt |
2310301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 2321040 - 2321285
Alignment:
| Q |
9 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
108 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| | |
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| T |
2321040 |
gatactacttccactgctttgcagtggattatggcgaatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggtta |
2321139 |
T |
|
| Q |
109 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
208 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| | |||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |
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| T |
2321140 |
gtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccacc |
2321239 |
T |
|
| Q |
209 |
-ggggcataatgtgttaccacacgcggtgacagaggatgtgctttt |
253 |
Q |
| |
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||||||| |||||| ||||| |||||| |||||||||| |||| |
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| T |
2321240 |
aggggcattttgtgttggcacacacggtgaaagaggatgtggtttt |
2321285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 2326893 - 2327100
Alignment:
| Q |
8 |
agataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggt |
107 |
Q |
| |
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||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |||||| |
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| T |
2326893 |
agatactacttccaccgctttgcattggattatggcgaatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggt |
2326992 |
T |
|
| Q |
108 |
catgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccac |
207 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
2326993 |
ggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccac |
2327092 |
T |
|
| Q |
208 |
cggggcat |
215 |
Q |
| |
|
| |||||| |
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|
| T |
2327093 |
cagggcat |
2327100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 2330609 - 2330853
Alignment:
| Q |
9 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
108 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||| ||||||| |||||||||||| |
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|
| T |
2330609 |
gatactacttccaccgctttgcaatggattatggcgaatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtg |
2330708 |
T |
|
| Q |
109 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
208 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
2330709 |
gcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccacc |
2330808 |
T |
|
| Q |
209 |
ggggcataatgtgttaccacacgcggtgacagaggatgtgctttt |
253 |
Q |
| |
|
|||||| ||||| || ||||| |||| ||||||||| |||| |
|
|
| T |
2330809 |
agggcatttcgtgttgcctcacgcagtgagcgaggatgtggtttt |
2330853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 41127050 - 41127165
Alignment:
| Q |
138 |
aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtga |
237 |
Q |
| |
|
||||||||||| |||||||| || ||||| || |||||| ||||||||||| ||||| |||| ||||||||||| |||||| || || ||||||| |
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| T |
41127050 |
aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtga |
41127149 |
T |
|
| Q |
238 |
cagaggatgtgctttt |
253 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
41127150 |
aggaggatgtggtttt |
41127165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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