View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_3 (Length: 628)
Name: NF18433_low_3
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 41628205 - 41628528
Alignment:
| Q |
14 |
gaaaacaatcgtgaaggaggaataccataaagattttgtagtcgatgtggatggtaagtgggttttgcagggatggaagggacgcattttaaatgcttta |
113 |
Q |
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| T |
41628205 |
gaaaacaatcgtgaaggaggaataccataaagattttgtagtcgatgtggatggtaagtgggttttgcagggatggaagggacgcattttaaatgcttta |
41628304 |
T |
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| Q |
114 |
tcagcttgggttcctgcttaagcaaaatgtccaaaaggtgtcttgcggtagtatatgtagtccactcttagacctgttgaaaaatatgcattgaaatctt |
213 |
Q |
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| T |
41628305 |
tcagcttgggttcctgcttaagcaaaatgtccaaaaggtgtcttgtggtagtatatgtaatccactcttagacctgttgaaaaatatgcattgaaatttt |
41628404 |
T |
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| Q |
214 |
ccttttctatttctctttctccatttgagtttttatttcatatattaatgtacaattcacttcctagatgttatatagcatgacaatctggtttttatga |
313 |
Q |
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| T |
41628405 |
ccttttctatttctctttctccatttgagtttttatttcatatattaatgtacaattcacttcctagatgttatatagcatgacaatcttgtttttatga |
41628504 |
T |
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| Q |
314 |
aacacgaattttctactaatcatg |
337 |
Q |
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| T |
41628505 |
aacacaaattttctactaatcatg |
41628528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 386 - 615
Target Start/End: Original strand, 41628577 - 41628806
Alignment:
| Q |
386 |
tggcagtaatacatcaaagaaaataacagcagttatatggttagaagacttggaagtaaaagacagtatttttcttaaaagttacttgatagataagcat |
485 |
Q |
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| T |
41628577 |
tggcagtaatacatcaaagaaaataacagcagttatatggttagaagacttggaagtaaaaaacagtatttttcttaaaagttacttgatagataagcat |
41628676 |
T |
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| Q |
486 |
accttcgttgagaggtaccatgttttgctctgcagaaacaagtcagaacttacgatgtacacctcaattctgcactacgaatctgtattgccctcttttg |
585 |
Q |
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| T |
41628677 |
accttcgttgagaggtaccatgttttgctctgcagaaacaagtcagaacttacaatgtacacctcaattctgcactacgaatctgtattgccctcttttg |
41628776 |
T |
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| Q |
586 |
ttattttttgttgttaaagatcaaatattt |
615 |
Q |
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| T |
41628777 |
ttattttttgttgttaaagatcaaatattt |
41628806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 41621903 - 41622038
Alignment:
| Q |
19 |
caatcgtgaaggaggaataccataaagattttgtagtcgatgtggatggtaagtgggttttgcagggatggaagggacgcattttaaatgctttatcagc |
118 |
Q |
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| T |
41621903 |
caatggtgaagaaggaataccataaagattttgtagttgatgtcgatggtaagtgggttttgcagggatggaaaggacgcattttgaatgctttatctgc |
41622002 |
T |
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| Q |
119 |
ttgggttcctgcttaagcaaaatgtccaaaaggtgt |
154 |
Q |
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| T |
41622003 |
ttgggttcctgcctaagcaaaatgtccaaaaagtgt |
41622038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 41625249 - 41625384
Alignment:
| Q |
19 |
caatcgtgaaggaggaataccataaagattttgtagtcgatgtggatggtaagtgggttttgcagggatggaagggacgcattttaaatgctttatcagc |
118 |
Q |
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| T |
41625249 |
caatggtgaagaaggaataccataaagattttgtagtcgatgtggattgtaaatgggttttgaagggatggaaaggacgtattttgtatgctttatctgc |
41625348 |
T |
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| Q |
119 |
ttgggttcctgcttaagcaaaatgtccaaaaggtgt |
154 |
Q |
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| T |
41625349 |
ttgggttcctgcttaagcaaaatgtccaaaaggtgt |
41625384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 23931104 - 23931153
Alignment:
| Q |
42 |
aaagattttgtagtcgatgtggatggtaagtgggttttgcagggatggaa |
91 |
Q |
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|||||||||||||| |||| |||||| ||||||||| ||||||| ||||| |
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| T |
23931104 |
aaagattttgtagttgatgaggatgggaagtgggttctgcagggttggaa |
23931153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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