View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_low_30 (Length: 264)
Name: NF18433_low_30
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 22468221 - 22468135
Alignment:
| Q |
16 |
acagaccctgagcttcaatattacagagaaagaacggcattaatgtcagtttcttttttggcaaataaattaatttcgatttcaggc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22468221 |
acagaccctgagcttcaatattacagagaaagaacggcattaatgtcagttacttttttggcaaataaattaatttcgatttcaggc |
22468135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 22468084 - 22468007
Alignment:
| Q |
152 |
atttaggttcaacaaaataataatttttattttaaaaatgaagagcctaattaaattaatgcatacagaaaattaggaaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
22468084 |
atttaggttcaacaaaataataattt--attttaaaa-tgaagagcctaattaaattcatgcatacagaaaattagtaaga |
22468007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University