View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18433_low_33 (Length: 235)

Name: NF18433_low_33
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18433_low_33
NF18433_low_33
[»] chr7 (3 HSPs)
chr7 (1-220)||(12732275-12732494)
chr7 (15-79)||(40905073-40905137)
chr7 (16-76)||(46757467-46757527)
[»] chr3 (1 HSPs)
chr3 (1-220)||(55124442-55124661)
[»] chr4 (6 HSPs)
chr4 (115-220)||(6680162-6680267)
chr4 (1-76)||(6680287-6680362)
chr4 (1-76)||(34956312-34956387)
chr4 (3-77)||(53664242-53664316)
chr4 (3-76)||(50709022-50709095)
chr4 (20-76)||(50709706-50709762)
[»] chr1 (2 HSPs)
chr1 (150-220)||(9430369-9430438)
chr1 (96-132)||(9430448-9430484)
[»] chr8 (2 HSPs)
chr8 (15-77)||(38686999-38687061)
chr8 (15-76)||(38686345-38686406)
[»] chr2 (1 HSPs)
chr2 (2-68)||(42370903-42370969)
[»] scaffold0041 (1 HSPs)
scaffold0041 (15-79)||(44881-44945)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12732275 - 12732494
Alignment:
Q  1 agtttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacattaaannnnnnncgctttcgcttc 100  Q
    ||||||||| ||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||         ||||| |||||    
T  12732275 agtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaacattaatttttttttgctttagcttc 12732374  T
Q  101 caccaccactctctcttccatcaccgttaacccattaccaacaacaatatcaaaaattccttaaaatgaaaacacggtctccactcacccaccaccatta 200  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12732375 caccaccgctctctcttccatcaccattaacccatcagcaacaacaatatcaaaatttccttaaaatgaaaacacggtctccactcacccaccaccatta 12732474  T
Q  201 gtaattattaaacttcaatc 220  Q
    ||||||||||||||| ||||    
T  12732475 gtaattattaaactttaatc 12732494  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 40905073 - 40905137
Alignment:
Q  15 ggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacatta 79  Q
    ||||||| ||| |||||  |||||||| |||||||| ||| ||||| ||| ||||||||||||||    
T  40905073 ggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaacatta 40905137  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 46757467 - 46757527
Alignment:
Q  16 gaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    |||||||||||||||  ||||||| | ||| |||| ||| ||||||||||||| |||||||    
T  46757467 gaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaaca 46757527  T

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Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 55124442 - 55124661
Alignment:
Q  1 agtttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacattaaannnnnnncgctttcgcttc 100  Q
    ||||||||| ||| ||||| ||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||||       ||||||  ||||    
T  55124442 agtttcccaccatgggaaaataaatattgactattagatcatgtaaagaacatagttttatcatagattctcaacattaaatttttttcgctttaacttc 55124541  T
Q  101 caccaccactctctcttccatcaccgttaacccattaccaacaacaatatcaaaaattccttaaaatgaaaacacggtctccactcacccaccaccatta 200  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55124542 caccaccgctctctcttccatcaccattaacccatcagcaacaacaatatcaaaatttccttaaaatgaaaacacggtctccactcacccaccaccatta 55124641  T
Q  201 gtaattattaaacttcaatc 220  Q
    ||||||||||||||| ||||    
T  55124642 gtaattattaaactttaatc 55124661  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 6680267 - 6680162
Alignment:
Q  115 cttccatcaccgttaacccattaccaacaacaatatcaaaaattccttaaaatgaaaacacggtctccactcacccaccaccattagtaattattaaact 214  Q
    ||||||||||| ||||||||| | |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |    
T  6680267 cttccatcaccattaacccatcagcaacaacagtatcaaaatttccttaaactgaaaacacggtctccactcacccaccaccatcagtaattattaaaat 6680168  T
Q  215 tcaatc 220  Q
    ||||||    
T  6680167 tcaatc 6680162  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6680362 - 6680287
Alignment:
Q  1 agtttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    |||||| || ||| ||||||||||||||||  ||||||| | |||||||| |||||||||||||||| ||||||||    
T  6680362 agtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaaca 6680287  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34956312 - 34956387
Alignment:
Q  1 agtttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    |||||||||| || ||||||| ||| ||||   |||||||| |||||||| | | |||||||||||||||||||||    
T  34956312 agtttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaaca 34956387  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 53664242 - 53664316
Alignment:
Q  3 tttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacat 77  Q
    ||||||| ||| ||||||||||||||||  ||||||| |  || |||| || |||||||||||||| ||||||||    
T  53664242 tttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaacat 53664316  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 50709022 - 50709095
Alignment:
Q  3 tttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    |||||||| || ||||||| ||| ||||   |||||||| |||||||| | | |||||||||||||||||||||    
T  50709022 tttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaaca 50709095  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 50709706 - 50709762
Alignment:
Q  20 gtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    |||||||||||  ||||||| | ||| |||| ||||||||||||||||| |||||||    
T  50709706 gtaaatattgactattagataaagtagagaacatagttttatcatagacactcaaca 50709762  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 9430438 - 9430369
Alignment:
Q  150 tcaaaaattccttaaaatgaaaacacggtctccactcacccaccaccattagtaattattaaacttcaatc 220  Q
    |||||| ||||||||| |||||| ||||||||||||||||||| | | | |||||||| ||||||||||||    
T  9430438 tcaaaatttccttaaa-tgaaaatacggtctccactcacccactatcctcagtaattaataaacttcaatc 9430369  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9430484 - 9430448
Alignment:
Q  96 gcttccaccaccactctctcttccatcaccgttaacc 132  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  9430484 gcttccaccaccactctctcttccattaccattaacc 9430448  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 38687061 - 38686999
Alignment:
Q  15 ggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacat 77  Q
    ||||||||||||||||| ||||||| | ||| |||| ||  ||||||||||||| ||||||||    
T  38687061 ggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaacat 38686999  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 38686345 - 38686406
Alignment:
Q  15 ggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaaca 76  Q
    ||||||||||||||||  ||||||| | ||| |||| || |||||||||||||| |||||||    
T  38686345 ggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaaca 38686406  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 42370969 - 42370903
Alignment:
Q  2 gtttcccatcatcggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagac 68  Q
    |||||||| ||| |||||||||||||||   ||||||| | ||  ||||||||||||||||||||||    
T  42370969 gtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagac 42370903  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 44945 - 44881
Alignment:
Q  15 ggaaagtaaatattgataattagatcatgtaaagaatatagttttatcatagactctcaacatta 79  Q
    ||||||| ||| |||||  |||||||| |||||||| ||| ||||| ||| ||||||||||||||    
T  44945 ggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaacatta 44881  T

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