View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_34 (Length: 226)
Name: NF18433_low_34
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39985343 - 39985127
Alignment:
| Q |
1 |
ccccacaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgcataatatcata |
100 |
Q |
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| T |
39985343 |
ccccacaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgcataatatcata |
39985244 |
T |
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| Q |
101 |
atcataacatacaatcatttttggatatacatataattttttgaaaaagcgttattaattacaaatatgcatgcaggtagaggaaattcatcagcgtttg |
200 |
Q |
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| T |
39985243 |
atcataacatacaatcatttttggatatacatataattttttgaaaaagcgttgttaattacaaatatgcat---ggtagaggaaattcatcagcgtttg |
39985147 |
T |
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| Q |
201 |
catgattattggtttcaatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
39985146 |
catgattattggtttcaatc |
39985127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 44917666 - 44917579
Alignment:
| Q |
5 |
acaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgcata |
92 |
Q |
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| T |
44917666 |
acaagtaaaactacatcatattgcttgtagtcttgtgcaggcgctccataaggaccatcgatcaaaactttagggagagtactgcata |
44917579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 44892263 - 44892185
Alignment:
| Q |
2 |
cccacaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttaggga |
80 |
Q |
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| T |
44892263 |
cccacaagtaaaaccacctcatattttttgtagtcttgtgcaggcgctccataaggaccgtcaaccaaaactttaggga |
44892185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 44900916 - 44900831
Alignment:
| Q |
5 |
acaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgca |
90 |
Q |
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||||||||||||||||| |||| | ||||||| ||||| ||||||||||| ||||| |||||| |||||||||| ||||||||| |
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| T |
44900916 |
acaagtaaaaccacctcgtactgcttgtagtcctgtgcaggcgctccataaggaccgtcaatccgaactttagggcgagtactgca |
44900831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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