View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18433_low_4 (Length: 579)
Name: NF18433_low_4
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 40763993 - 40764561
Alignment:
| Q |
1 |
atgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40763993 |
atgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaagctaaacggaatgtatccaagctgga |
40764092 |
T |
|
| Q |
101 |
agaaagatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764093 |
agaaagatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggt |
40764192 |
T |
|
| Q |
201 |
cagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40764193 |
cagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctg |
40764292 |
T |
|
| Q |
301 |
aattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatctatagctgtttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40764293 |
aattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatcgatagctgtttg |
40764392 |
T |
|
| Q |
401 |
aagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40764393 |
aagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccccattatcagctgaatgccaattcaaatactttgttt |
40764492 |
T |
|
| Q |
501 |
tttatggtaataaacttatttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
569 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40764493 |
tttagggtaataaacttatttttttagtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
40764561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40763873 - 40763908
Alignment:
| Q |
1 |
atgttgaagctgctaagcttgttgctcaggagaagg |
36 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
40763873 |
atgttgaagctgctaagcttgttgttcaggagaagg |
40763908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 37 - 386
Target Start/End: Original strand, 42911676 - 42912029
Alignment:
| Q |
37 |
agaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaa |
136 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42911676 |
agaaggagattagtgctgctgtggctgaacttaaaaaagcaaaagaaaatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaa |
42911775 |
T |
|
| Q |
137 |
agatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagt |
236 |
Q |
| |
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|| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42911776 |
ggacggaaaggtggattatactaaagatttctttgcccgtcaagcgtttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagt |
42911875 |
T |
|
| Q |
237 |
agtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcag |
336 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911876 |
cgcgtgtatacatttggcccgacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcag |
42911975 |
T |
|
| Q |
337 |
acttggaggtatataaaaaggaacacact----atctggttatgattattctca |
386 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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|
| T |
42911976 |
acttggaggtatataaaaatgaacacacactcaatcttgttatgattattctca |
42912029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 419 - 569
Target Start/End: Original strand, 42912038 - 42912182
Alignment:
| Q |
419 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
518 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| | |||||||||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||| |
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| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatact--gttttttagggtaataaactta |
42912135 |
T |
|
| Q |
519 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
569 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
42912136 |
tttttctagtgc----aatcttgaactgccaacttcacccctactcctatg |
42912182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42911601 - 42911636
Alignment:
| Q |
1 |
atgttgaagctgctaagcttgttgctcaggagaagg |
36 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
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|
| T |
42911601 |
atgttgaagctgctaagcttgttgttcaggagaagg |
42911636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 41661999 - 41661931
Alignment:
| Q |
240 |
gtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
308 |
Q |
| |
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|||||||||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
41661999 |
gtgtatacatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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