View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_low_5 (Length: 541)
Name: NF18433_low_5
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Complemental strand, 53597471 - 53596954
Alignment:
| Q |
14 |
attatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53597471 |
attatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgt |
53597372 |
T |
|
| Q |
114 |
tggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttctttagtcctttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53597371 |
tggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttatttagtcctttt |
53597272 |
T |
|
| Q |
214 |
aaactagcaatatgagtatattgtatgttggtataaattgagcaaatgtgtatggttgagatttgtgaatagttattaaattgcctttgatatctgatta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53597271 |
aaactagcaatatgagtatattgtatgttggtataaattgagcgaatgtgtatggttgtgacttgtgaatagttattaaattgcatttgatatctgatta |
53597172 |
T |
|
| Q |
314 |
gtgtttgggacaataagtcaaagtaaacaagagaggatatatatgccaatttgtgtgttgatttgtatgta----cttg--tatgcagttatgtatattc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
53597171 |
gtgtttgggacaataagtcaaagtaaacaagagagggtatatatgccaatttgtgtgttgatttgtatgtatgtacttgcgtatccagttatgtatattc |
53597072 |
T |
|
| Q |
408 |
tggtaacagagaatgtgaatttcacaaacatgtatattacttgagttattatggatggtaagagggtggaaacaccaattcatctgttacttcaatctga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
53597071 |
tggtaacagagaatgtgaatttcacaaacatgtatattacttgagttattatggatggtaagagggtggaaacaccaattcatctgtttcttcaatgtga |
53596972 |
T |
|
| Q |
508 |
atttggtttgattatttg |
525 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
53596971 |
atttggtttgattatttg |
53596954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University