View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18433_low_6 (Length: 515)
Name: NF18433_low_6
Description: NF18433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18433_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 16374653 - 16375099
Alignment:
| Q |
17 |
cagagaataaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagg |
116 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
16374653 |
cagagaataaatttgatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaagccatgaatcaaatcaaattggcataaacgtcaag |
16374752 |
T |
|
| Q |
117 |
gaccaacaccagagaataaaaatgat---acgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaaacatt-cgcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||| |
|
|
| T |
16374753 |
gaccaacaccagagaataaaaatgatcatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttgccacacaaaaagtttcgcc |
16374852 |
T |
|
| Q |
213 |
atgaaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaat |
312 |
Q |
| |
|
| |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16374853 |
acgaaatgaaacttaacacacaagacactttgaagaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaat |
16374952 |
T |
|
| Q |
313 |
atcatcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcatcagagacatactagtatagtaagtac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
16374953 |
atcatcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcctcatagacatactagtatagtaagtac |
16375052 |
T |
|
| Q |
413 |
aaatttaatgatatccaatcaactgactgagatcagccacacattgt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16375053 |
aaatttaatgatatccaatcaactgactgagatcagccacaccttgt |
16375099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 30615065 - 30614713
Alignment:
| Q |
17 |
cagagaataaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagg |
116 |
Q |
| |
|
|||||| ||||||| ||||||||| |||| |||||| |||||| | |||||||| ||||||||||| |||||||||||||||||| ||| ||| || | |
|
|
| T |
30615065 |
cagagagtaaacttgatacgattcaacaatttgtgaatcgatttaagcatgatatgaatcaagaagtaatgaatcaaatcaaattgacatgaacaacaag |
30614966 |
T |
|
| Q |
117 |
gaccaacaccagagaataaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaaa-cattcgccatg |
215 |
Q |
| |
|
| |||| |||| | ||||| ||| |||| ||||||||||| |||||| ||||||| |||||||||| ||||||||| | ||||||| || | | |
|
|
| T |
30614965 |
ggccaagaccatataataagaataatacaattcaagctatattgaatcgaatcaaggccttagaaagaaaaggttttgtcacacaaaaggttttgttaca |
30614866 |
T |
|
| Q |
216 |
aaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattat-aaagaaacaataaatat |
314 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| ||| | ||| ||||||||||||||||||||| ||||||| | |||| ||| ||||| || |
|
|
| T |
30614865 |
aaatgaaacttgacacacaaaacacttcaaagaaccgtaagagcatgtattgctaggtgctttaacatgtgttaaacatcgtaaaaggaaccataaacat |
30614766 |
T |
|
| Q |
315 |
catcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatacta |
367 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
30614765 |
catcaaattatctagcatcctaatcaaacattagcgaaacaagaactatacta |
30614713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 18370738 - 18370599
Alignment:
| Q |
218 |
atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaaga-aacaataaatatca |
316 |
Q |
| |
|
||||||||||| | ||| |||||||||| |||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||| |||| |
|
|
| T |
18370738 |
atgaaacttgaaacacacgacactttgaagaaccctaaaatcatggattgctaggtgctttaacatatggtaatcatcataaagagaacaataaacatca |
18370639 |
T |
|
| Q |
317 |
tcaaattatctaacatcctaatcaaacatcatcaaaacaa |
356 |
Q |
| |
|
|||| || ||| || ||||||||||||||||||| |||| |
|
|
| T |
18370638 |
tcaatatacctagcaacctaatcaaacatcatcaatacaa |
18370599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 16594356 - 16594400
Alignment:
| Q |
312 |
tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16594356 |
tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa |
16594400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 27877493 - 27877446
Alignment:
| Q |
135 |
aaaatgatacgattcaagctattttgaattgaatcaaagccttagaaa |
182 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||| |||||||| |
|
|
| T |
27877493 |
aaaatgatacgattcaaacaattttgaatcgaatcaaaggcttagaaa |
27877446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 25 - 363
Target Start/End: Complemental strand, 8363334 - 8362994
Alignment:
| Q |
25 |
aaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagggaccaaca |
124 |
Q |
| |
|
|||||| ||||||||| ||| |||||| || |||||||||||||| ||||||||||| ||||||| ||||||||| ||| | | || || |||| | |
|
|
| T |
8363334 |
aaacttgatacgattcaacattttgtgaatctattcaggcatgatacgaatcaagaagtaatgaatcgaatcaaatttacatgaccaacaagggccaaga |
8363235 |
T |
|
| Q |
125 |
ccagagaataaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaa-acattcgccatgaaatgaaa |
223 |
Q |
| |
|
||||||||||| ||| |||| | ||||| | ||||||||||||||| | |||||||||| |||||||| || |||||| | || ||||| |||| ||| |
|
|
| T |
8363234 |
ccagagaataagaataatactactcaagaaaatttgaattgaatcaagggcttagaaattgaaggttttgccacacaaatagttttgccataaaataaaa |
8363135 |
T |
|
| Q |
224 |
cttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatcatcaaat |
322 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| | || |||||||||||||||||||||| |||| |||||||| ||||||||||| |||| ||||| |
|
|
| T |
8363134 |
cttgacacacaagacactttgaggaaccctaagagtatggattgctaggtgctttaacatgtgataaatattataaaagaaacaataaacatcaccaaat |
8363035 |
T |
|
| Q |
323 |
tatctaacatcctaatcaaacatcatcaaaacaagaactat |
363 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8363034 |
tatctagcatcgtaatcaaacatcatcaaaataagaactat |
8362994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 221 - 364
Target Start/End: Complemental strand, 17522042 - 17521898
Alignment:
| Q |
221 |
aaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattata-aagaaacaataaatatcatca |
319 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||| | ||| |||||||| || ||||||||| ||||||| |||| ||||||||||| | ||||||| |
|
|
| T |
17522042 |
aaacttgacacacaagacactttgagaaaccctaagatcatggattgctaagtcttttaacatgtgctaaacaatatagaagaaacaatagacatcatca |
17521943 |
T |
|
| Q |
320 |
aattatctaacatcctaatcaaacatcatcaaaacaagaactata |
364 |
Q |
| |
|
| |||||||||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
17521942 |
atttatctaacaacccaatcaaacatcataaaaacaagagctata |
17521898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 11533620 - 11533572
Alignment:
| Q |
134 |
aaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaa |
182 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
11533620 |
aaaaatgatacgattcaaactattttgaatcgaatcaaaggcttagaaa |
11533572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 17350303 - 17350360
Alignment:
| Q |
298 |
aaagaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa |
356 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
17350303 |
aaaggaacaataaa-atcatcaaaatatctagcagcctaatcaaacatcatcaaaacaa |
17350360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 76 - 353
Target Start/End: Original strand, 18645246 - 18645528
Alignment:
| Q |
76 |
caagaaggcatgaatcaaatcaaattggcataaacgtcagggaccaaca---ccagagaataaaaatgatacgattcaagctattttgaattgaatcaaa |
172 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||| ||| | |||| | ||||||||||||||||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
18645246 |
caagaagtaatgaatcaaatcaaattgacatgaacatcaaaggccaagaagaccagagaataaaaatgacatgattcaagctaatttgaatcgaatcaag |
18645345 |
T |
|
| Q |
173 |
gccttagaaattaaaggttttaccgcacaaaacattc-gccatgaaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctag |
271 |
Q |
| |
|
|||||||||||||||||||| || ||||||| || |||| |||| |||||||||| |||| |||||||||| ||||||| | ||| | ||||||| |
|
|
| T |
18645346 |
accttagaaattaaaggttttgccacacaaaaagttttgccacaaaataaaacttgacacacaagacactttgaaggaccctaagagcatgggttgctag |
18645445 |
T |
|
| Q |
272 |
gtgctttaacatgcactaaacattataaa-gaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaa |
353 |
Q |
| |
|
|||||||| | | |||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
18645446 |
atgctttaagaagtgctaaacattataaaagaaacaataaacatcatcaaattatctagcatcctactcaaacatcatcaaaa |
18645528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 367
Target Start/End: Complemental strand, 42377594 - 42377470
Alignment:
| Q |
242 |
ttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaa-caataaatatcatcaaattatctaacatcctaatca |
340 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||| |||| |||| ||||||||| | ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
42377594 |
ttgaagaaccctaagagcatagattgctaggtgcttta-catgtgctaa-cattataaaatgagcaataaacatcatcaaattatctagcatcctaatca |
42377497 |
T |
|
| Q |
341 |
aacatcatcaaaacaagaactatacta |
367 |
Q |
| |
|
||||| |||||||||| ||||| |||| |
|
|
| T |
42377496 |
aacattatcaaaacaaaaactaaacta |
42377470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 42378367 - 42378311
Alignment:
| Q |
35 |
cgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatc |
91 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||| ||| |||||||| |
|
|
| T |
42378367 |
cgattcaacaacttgtgattcgattcaggtatgatgcgaatcaaaaagtcatgaatc |
42378311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 353
Target Start/End: Complemental strand, 11454403 - 11454265
Alignment:
| Q |
216 |
aaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatat |
314 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| || || ||||||||||| || ||| || ||||| |||||||| | ||||||||| || |
|
|
| T |
11454403 |
aaatgaaacttgacacacaaaacactttgaagaaccctaagaatatggattgctaggtactataaaatatgctaaatattataaaaggaacaataaacat |
11454304 |
T |
|
| Q |
315 |
catcaaattatctaacatcctaatcaaacatcatcaaaa |
353 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
11454303 |
catcaaattatctagcatcctaatcaaacatcataaaaa |
11454265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University