View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18434_high_3 (Length: 374)
Name: NF18434_high_3
Description: NF18434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18434_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 41084742 - 41084386
Alignment:
| Q |
1 |
taacacataacaatgtcttctatgactgaaacttaactcagctacttgcgtttgcagaagaaaaaatggggaaactggttgaacataaccgggtgtttcg |
100 |
Q |
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| T |
41084742 |
taacacataacaatgtcttctatgactgaaacttaactcagctacttgcgtttgcagaagaaaaaatggggaaactggttgaacataaccgggtgtttcg |
41084643 |
T |
|
| Q |
101 |
gctatcagaaaaacaaccgaaagcggatcgggcatgctgttcttgttccagaaacaacacctactggagcagatgctgctgctaatgctgttagttcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41084642 |
gctatcagaaaaacaaccgaaagcggatcgggcatgctgttcttgttccagaaacaacacctactggagcagatgctgctgctaatgctgttagttcaac |
41084543 |
T |
|
| Q |
201 |
agctcaagcaccaccaagtataacacttcccttcattgctcctccttcatctcctgcatcattcttccaatctgaacctccttcaacagcacaatcaccg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41084542 |
agctcaagcaccaccaagtataacacttcccttcattgctcctccttcatctcctgcatcattcttccaatctgaacctccttcaaccgcacaatcaccg |
41084443 |
T |
|
| Q |
301 |
gtcggtatattatccaaaacttctgtatctgcaagcatgtactcacctggtggccct |
357 |
Q |
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| T |
41084442 |
gtcggtatattatccaaaacttctgtatctgcaagcatgtactcacctggtggccct |
41084386 |
T |
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