View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18434_low_1 (Length: 548)
Name: NF18434_low_1
Description: NF18434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18434_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 4 - 536
Target Start/End: Original strand, 36770345 - 36770876
Alignment:
| Q |
4 |
tatttgacctggtcttagtatataattttgaaagtcttcaacttgcgtcaatgaagaattttctgtcccttctttccactggatgctatatatgtatatc |
103 |
Q |
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| T |
36770345 |
tatttgacctggtcttcgtatgtaattttgaaagtcttcaacctgcgtcaatgaagaattttctgtcccttctttccactggatactatatatgtatatc |
36770444 |
T |
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| Q |
104 |
aagttaaatctagacaacttatgtaaaacatttgttgttcatcaaagcactttttcaattgatccattctttgatttattcagttttcacttcaaaagtg |
203 |
Q |
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| T |
36770445 |
aagttaaatctacacaacttatgtaaaacatttgttgtccatcaaagcactttttcaattgatccattctttgattt-ttcagttttcacttcaaaagtg |
36770543 |
T |
|
| Q |
204 |
tcatggcaaatcttggaactacacaaagaatactaccaacctcctcaaaaccttcatccccaacaactgacacacacgaaccaaaatcaccacatgaaaa |
303 |
Q |
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| T |
36770544 |
tcatggcaaatcttggaactacacaaagaatactaccaacctcctcaaaaccttcatccccaacaactgacacacacgaaccaaaatcaccacatgaaaa |
36770643 |
T |
|
| Q |
304 |
actatatgctgatctcaaattctattgcccaattaacatccccttaacacaagatgctgcagcatctcgcatcataagaaacttagggaatttggggtta |
403 |
Q |
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| T |
36770644 |
actatatgctgatctcaaattctattgcccaattaacatccccttaacacaagatgctgcagcatctcgcatcataagaaacttagggaatttggggtta |
36770743 |
T |
|
| Q |
404 |
tactacacactctttatttggatcatactcttcataaccctcataccggaacgaaaagtgtcgttgattctgttggttatcatgacttatgtgacaaccc |
503 |
Q |
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| T |
36770744 |
tactacacactctttatttggatcatactcttcataaccctcataccggaacgaaaagtgtcgttgattctgttggttatcatgacttatgtgacaaccc |
36770843 |
T |
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| Q |
504 |
tttattgtttactattaagggcatgtcctaatt |
536 |
Q |
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| T |
36770844 |
tttattgtttactattaagggcatgtcctaatt |
36770876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 156 - 536
Target Start/End: Original strand, 36772747 - 36773120
Alignment:
| Q |
156 |
tttcaattgatccattctttgatttattcagttttcacttcaaaagtgtcatggcaaatcttggaactacacaaagaatactaccaacctcctcaaaacc |
255 |
Q |
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| T |
36772747 |
tttcaattgatccattctttgattt-tccaatttccatttcaaagcttttatggcaaatcttggaactacacaaagaatac---caacttc---aaaacc |
36772839 |
T |
|
| Q |
256 |
ttcatccccaacaactgacacacacgaaccaaaatcaccacatgaaaaactatatgctgatctcaaattctattgcccaattaacatccccttaacacaa |
355 |
Q |
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| T |
36772840 |
ttcatccccaacaacagacacatatgaaccaaaatcaccacatgaaaaactatatgctaatttcaaattctattgcccaattaaccttcccttgacacaa |
36772939 |
T |
|
| Q |
356 |
gatgctgcagcatctcgcatcataagaaacttagggaatttggggttatactacacactctttatttggatcatactcttcataaccctcataccggaac |
455 |
Q |
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| T |
36772940 |
gaagttgcagcatctcgcatcataagaaacttgaagcatatagggctatactatacactttttatttggatgatactcttcataactctgatacctgacc |
36773039 |
T |
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| Q |
456 |
gaaaagtgtcgttgattctgttggttatcatgacttatgtgacaaccctttattgtttactattaagggcatgtcctaatt |
536 |
Q |
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| T |
36773040 |
aaaaagtgtccttaattctgttgcttatcatgacctatgtgacaaccctttattgtttaatactaaggtcatgtcctaatt |
36773120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 531
Target Start/End: Complemental strand, 31312455 - 31312326
Alignment:
| Q |
402 |
tatactacacactctttatttggatcatactcttcataaccctcataccggaacgaaaagtgtcgttgattctgttggttatcatgacttatgtgacaac |
501 |
Q |
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| T |
31312455 |
tatattacacactttttgtgtggatcatactcttcataatcctcatccctcatcacaaaacatcattgattctgttggttataatgacatatgtgataac |
31312356 |
T |
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| Q |
502 |
cctttattgtttactattaagggcatgtcc |
531 |
Q |
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| T |
31312355 |
catttatcatttactactaagagcatgtcc |
31312326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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