View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18435_high_12 (Length: 320)
Name: NF18435_high_12
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 315
Target Start/End: Complemental strand, 2675327 - 2675033
Alignment:
| Q |
22 |
aaactttcttcctatgaattgaatatatgtcgactacttttgttgtgagattttgagtttcatttcatgcactatttatagtgtttcatgagtcgtgtat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2675327 |
aaactttcttcctatgaattgaatatatgtagactacttttgttgtgagattttgagtttcatttcatgcactatttatagtgtttcatgagtcgtgtat |
2675228 |
T |
|
| Q |
122 |
gataaccacgtgtctaacttcttgacacgtgcacaacatgtgtcatcccatggatggttgtaaacttgtatgcaa-tttctaagtttaagatgagaaacc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2675227 |
gataaccacgtgtctaacttcttgacacgtgcacaacatgtgtcatcccatggatggttgtaaacttgtatgcaattttctaagtttaagatgagaaacc |
2675128 |
T |
|
| Q |
221 |
aacctgtagaattttgacaagttgccattacttgagtattatataatgatgctgagatagatgcatgattttattttttgtctgacatatctgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2675127 |
aacctgtagaattttgacaagttgccattacttgagtattatataatcatgctgagatagatgcatgattttattttttgtctgacatatctgtg |
2675033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 2681644 - 2681371
Alignment:
| Q |
18 |
atagaaactttcttcctatgaattgaatatatgtcgactacttttgttgtgagattttgagtttcatttcatgcactatttatagtgtttcatgagtcgt |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||||||||||| ||||| ||||||||||||||||| || || |
|
|
| T |
2681644 |
atagaaactttcttcctatgaat--aatatatgtcgaatatttttgttgtgaggttttgagtttcattg-atgcattatttatagtgtttcataggtagt |
2681548 |
T |
|
| Q |
118 |
gtatgataaccacgtgtctaacttcttgacacgtgcacaacatgtgtcatcccatggatggttgtaaacttgtatgcaatttctaagtttaagatgagaa |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| |||| |||| |||||||||||| | || |
|
|
| T |
2681547 |
gtatgataaccacgtgtccaacttcttgacacgtccacaacacgtgtcgttccatggatggttgtaaacttgaatgccatttataagtttaagataataa |
2681448 |
T |
|
| Q |
218 |
accaacctgtagaattttgacaagttgccattacttgagtattatataatgatgctgagatagatgcatgattttatttttt |
299 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||| |||||||||| |||||| |||| || ||||||||| |||||| |
|
|
| T |
2681447 |
accagcctctagaattttgacaagttgcc---acttgtttattatataacgatgctaagat--atccatgattttttttttt |
2681371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 2666176 - 2666000
Alignment:
| Q |
93 |
ctatttatagtgtttcatgagtcgtgtatgataaccacgtgtctaacttcttgacacgtgcacaacatgtgtcatcccatg--gatggttgtaaacttgt |
190 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||| |||||| |||| || | | ||||||| ||||||| |
|
|
| T |
2666176 |
ctatttatagtatttcatgagtcatgtatgataaccacgtattcaacttcttgacacgtttacaacacgtgttgccctaagatgatggttacaaacttga |
2666077 |
T |
|
| Q |
191 |
atgcaatttctaagtttaagatgagaaaccaacctgtagaattttgacaagttgccattacttgagtattatataatga |
269 |
Q |
| |
|
||| ||| | ||||||||||||| || || ||||| || |||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
2666076 |
gtgc-ctttat-agtttaagatgaggaatcagcctgtggagttttgacaagttgcaattacttgattattatatgatga |
2666000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University