View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_high_13 (Length: 298)
Name: NF18435_high_13
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 34345305 - 34345037
Alignment:
| Q |
15 |
tcatatggttggtgacaaaatttaagttgaaattcttcaatgcacgttcctagaaaaacataaaccaccaaaagagaaaaa-atatgttccaacttccta |
113 |
Q |
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| T |
34345305 |
tcatatggttggtgacaaaatttaagttgaaattcttcaatgcacgttcctagaaaaacataaaccaccaaaagaaagaaagaaatgttccaacttccta |
34345206 |
T |
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| Q |
114 |
tttgcaattgcactactaacaccc-aaccaatcaaaaaactatatttcaaacattactnnnnnnnttcacactctacaaataaatgttgagaagtttaag |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34345205 |
tttgcaattgcactactaacaccccaaccaatcaaaaaactatatttcaaacattactaaaaaaattcacactctacaaataaatgttgagaagtttaag |
34345106 |
T |
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| Q |
213 |
taattcacaacactaatatatcataactttggatatgtttctccacggcttgaaagtttatcttttaca |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34345105 |
taattcacaacactaatatatcataactttggatatgtttcttcacggcttgaaagtttatcttttaca |
34345037 |
T |
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