View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_high_2 (Length: 630)
Name: NF18435_high_2
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 9165564 - 9164941
Alignment:
| Q |
18 |
caatccgcaaattcttatacttgtgagtgtgacatgtcaatcatatattgccatttccgtgtcatagctaattat-caattggttatacattaggtaatt |
116 |
Q |
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| T |
9165564 |
caatccgcaaattcttatacttgtgagtgtgacatgtcaatcatatattgccatttccgtgtcatagctaattatacaattggttatacattaggtaatt |
9165465 |
T |
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| Q |
117 |
aggtatggatttatttatggaaatatgtatttttggacttttatcctccataaggagggttgactagatgaaagataatttaatagtaaaagatagacaa |
216 |
Q |
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| T |
9165464 |
aggtatggatttatttatggaaatatgtatttttggacttttatcctccataaggagggttgactagatgaaagataatttaatagtaaaagatagacaa |
9165365 |
T |
|
| Q |
217 |
aggaaactataggccaaaccattgggagagatttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgttacttgagttac |
316 |
Q |
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| T |
9165364 |
aggaaactataggccaaaccattgggagagatttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgttagttgagttac |
9165265 |
T |
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| Q |
317 |
gatttgacccagctttaggaacctaacccatgagactggtgacaggcgtccttaatatttatatcttttggaaaattctacatat--------------- |
401 |
Q |
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| T |
9165264 |
gatttgacccagctttaggaacctaacccatgagactggtgacaggcgtccttgatatttatatcttttggaaaattgtacatatagagtataacatgga |
9165165 |
T |
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| Q |
402 |
gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgataat |
501 |
Q |
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| T |
9165164 |
gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgatgat |
9165065 |
T |
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| Q |
502 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaat |
601 |
Q |
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| T |
9165064 |
gatgaggaggaggatgaagataatgacgaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaat |
9164965 |
T |
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| Q |
602 |
ctgatgaagaggatgatgatgatg |
625 |
Q |
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| T |
9164964 |
ctgatgaagaggatgctgatgatg |
9164941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 402 - 617
Target Start/End: Complemental strand, 9152335 - 9152123
Alignment:
| Q |
402 |
gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgataat |
501 |
Q |
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| T |
9152335 |
gtggatgaggaaaattccatatttggtttctttggttttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggacgatgag--- |
9152239 |
T |
|
| Q |
502 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaat |
601 |
Q |
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| T |
9152238 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaatctgggaaagagctgaagaagctgcttgggcgaactggtggtctaagtgaat |
9152139 |
T |
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| Q |
602 |
ctgatgaagaggatga |
617 |
Q |
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| T |
9152138 |
ctgatgatgatgatga |
9152123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 620
Target Start/End: Original strand, 9179434 - 9179532
Alignment:
| Q |
523 |
aatgaagaag--ggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgatga |
620 |
Q |
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| T |
9179434 |
aatgaagaagaagggaaggtctgagtaaatctgggaaagagatgaagaagctgctt-ggtgagctggtggtctaagtgaatccgatgcagatgacgatga |
9179532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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