View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_high_4 (Length: 450)
Name: NF18435_high_4
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 107 - 434
Target Start/End: Original strand, 8037474 - 8037801
Alignment:
| Q |
107 |
ctaacagaggaagtgtgtcatgaattggccaaacaaataggagaagacaaaactaagattgagaagcttatgagggactcaataaaaatttacaaggaag |
206 |
Q |
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| T |
8037474 |
ctaacagaggaagtgtgtcatgaattgaccaaacaaataggagaagacaaaactaagattgagaagcttatgagggactcaataaaaatttacaaggaag |
8037573 |
T |
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| Q |
207 |
ttgaagatgagagggagatgatgcaaatgaccgagcaatggcgcgaagtacgcgtgcaaatgaagctagacgatgcaaaaaatgtacttgaagagaaata |
306 |
Q |
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| T |
8037574 |
ttgaagatgagagggagatgatgcaaatgaccgagcaatggcgcgaagtacgcgtgcaaatgaagctagacgatgcaaaaaatgtacttgaagagaaata |
8037673 |
T |
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| Q |
307 |
taatcaaatggtagagttgattgcttatcttcaaatgtttttaagatcaaaaggtgatgaagctaaccagaaggaaattgaggatgctgggttgatcaaa |
406 |
Q |
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| T |
8037674 |
taatcaaatggtagagttgattgcttatcttcaaatgtttttaagatcaaaaggtgatgaagctaaccagaaggaaattgaggatgctaggttgatcaaa |
8037773 |
T |
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| Q |
407 |
caagtggttgaatcggtaaacattcaac |
434 |
Q |
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| T |
8037774 |
caagtggttgaatcggtaaacattcaac |
8037801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8037368 - 8037439
Alignment:
| Q |
1 |
gaggatggagttgctgaataccaaattgttgcatgaattggatgtaggtaacgaatccactgcgcagtttat |
72 |
Q |
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| T |
8037368 |
gaggatggagttgctgaataccaaattgttgcatgaattggatgtaggtaacgaatccactgcgcagtttat |
8037439 |
T |
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