View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18435_high_6 (Length: 417)

Name: NF18435_high_6
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18435_high_6
NF18435_high_6
[»] chr3 (7 HSPs)
chr3 (13-369)||(4166981-4167337)
chr3 (20-369)||(4151212-4151561)
chr3 (120-196)||(7021167-7021244)
chr3 (24-67)||(7021282-7021325)
chr3 (378-417)||(4150843-4150882)
chr3 (378-417)||(4166612-4166651)
chr3 (305-355)||(7021004-7021054)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 4167337 - 4166981
Alignment:
Q  13 catcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaacacatgacaaagaaat 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  4167337 catcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaacacgtgacgaagaaat 4167238  T
Q  113 gttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatt 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167237 gttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatt 4167138  T
Q  213 tctctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaa 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4167137 tctcttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaa 4167038  T
Q  313 acccaaatttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat 369  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||    
T  4167037 acccaaatttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat 4166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 4151561 - 4151212
Alignment:
Q  20 tacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaacacatgacaaagaaatgttgaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  4151561 tacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaacacgtgacgaagaaatgttgaaa 4151462  T
Q  120 tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttctcttt 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4151461 tatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttctcttg 4151362  T
Q  220 gcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaaacccaaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4151361 gcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaaacccaaa 4151262  T
Q  320 tttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat 369  Q
    ||||||||||||||||||||||||| ||||| ||| ||||| ||||||||    
T  4151261 tttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat 4151212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 7021244 - 7021167
Alignment:
Q  120 tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaa-tcttaaacattctatcta 196  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| |||||||||| |||||||    
T  7021244 tatagaaaatgaaacaaaatagaaacgataattcaataagttgcaggaaaataaataaattcttaaacatgctatcta 7021167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
Q  24 aaatagttggatatagcagacgatgtaatctacatgataccatg 67  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  7021325 aaatagttggatacagcagacgatgtaatctatatgataccatg 7021282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 4150882 - 4150843
Alignment:
Q  378 attcaatccttactaaaggagcatcagagagagttgtaat 417  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  4150882 attcaatccttactatacgagcatcagagagagttgtaat 4150843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 4166651 - 4166612
Alignment:
Q  378 attcaatccttactaaaggagcatcagagagagttgtaat 417  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  4166651 attcaatccttactatacgagcatcagagagagttgtaat 4166612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 7021054 - 7021004
Alignment:
Q  305 tctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaat 355  Q
    |||| |||||| ||||||||| |||||||||||||||||| |||| |||||    
T  7021054 tctgtaaaacctaaatttagaggcaatatatgttgcaaatcagacaaaaat 7021004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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