View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18435_low_1 (Length: 655)

Name: NF18435_low_1
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18435_low_1
NF18435_low_1
[»] chr7 (1 HSPs)
chr7 (18-652)||(34098487-34099121)


Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 34099121 - 34098487
Alignment:
Q  18 aagtagggacatgaaggatataacttagtgctaatgcttgttaataataattactagtgttggacgaatgtgatttaggccgtgacatcaatatttttat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34099121 aagtagggacatgaaggatataacttagtgctaatgcttgttaataataattactagtgttggacgaatgtgatttaggccgcgacatcaatatttttat 34099022  T
Q  118 atcttcgcgattgcaatgtgattgagaatgtattatcaacattatttgactgtaattcttcgtgaaatcaaagattgcaacgcgactgcaattgagagtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34099021 atcttcgcgattgcaatgtgattgagaatgtattatcaacattatttgactgtaattcttcgtgaaatcaaagattgcaacgcgactgcaattgagagtg 34098922  T
Q  218 tgattggttactaattataacaatttttagctaaagtatttgtattgtattcagttttttgaaagtacaaaaaatgtagagatgaaagcaatgtaaccaa 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34098921 tgattggttgctaattataacaatttttagctaaagtatttgtattgtattcagtttttttaaagtacaaaaaatgtagagatgaaagcaatgtaaccaa 34098822  T
Q  318 agnnnnnnnnggtgacaggaattcccagatggaaaatttcctgctggagggaaatctgacatagaaggcattttccctccaccttactttgagtggtttc 417  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34098821 agttttttttggtgacaggaattcccagatggaaaatttcctgctggagggaaatctgacatagaaggcattttccctccaccttactttgagtggtttc 34098722  T
Q  418 aattcgacaaggtggaaatattatatcctttttctgtttcatttcaaattttgttggttatgtatgtatcaatgaaaagttatcaaactctatgtatcaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34098721 aattcgacaaggtggaaatattatatcctttttctgtttcatttcaaattttgttggttatgtatgtatcaatgaaaagttatcaaactctatgtatcaa 34098622  T
Q  518 ttgaatttaactaaacatatagtaactcttatatttcaggatttcactgtgtacactaacttggacgaatgcatctcatacttgactgaatacatcatag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34098621 ttgaatttaactaaacatatagtaactcttatatttcaggatttcactgtgtacactaacttggacgaatgcatctcatacttgactgaatacatcatag 34098522  T
Q  618 ctaatggtccctttgatggtttcctttgcttctcc 652  Q
    |||||||||||||||||||||||||| ||||||||    
T  34098521 ctaatggtccctttgatggtttccttggcttctcc 34098487  T

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