View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18435_low_10 (Length: 340)

Name: NF18435_low_10
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18435_low_10
NF18435_low_10
[»] chr3 (10 HSPs)
chr3 (20-328)||(22434270-22434578)
chr3 (214-308)||(22465752-22465846)
chr3 (136-210)||(22633144-22633218)
chr3 (214-274)||(22440548-22440608)
chr3 (136-210)||(22448418-22448491)
chr3 (229-287)||(22355556-22355614)
chr3 (136-210)||(22440452-22440524)
chr3 (160-210)||(22465652-22465701)
chr3 (244-309)||(22633283-22633348)
chr3 (136-200)||(22351570-22351636)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 22434270 - 22434578
Alignment:
Q  20 cttcaaacgagttttacgaacgatggagataagtaaaaacaagataagtaatacataacaaaatacaaagaaaaggagtcacaaatcctaagataagtaa 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434270 cttcagacgagttttacgaacgatggagataagtaaaaacaagataagtaatacataacaaaatacaaagaaaaggagtcacaaatcctaagataagtaa 22434369  T
Q  120 aaacaacaaccaagataagcaaagttcacacaacatattaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatcttaataaca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434370 aaacaacaaccaagataagcaaagttcacacaacatattaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatcttaataaca 22434469  T
Q  220 atgaaaaacaacacattcttttttattgaggaagggaagtgccaaaacagaaacagaaagaagcaatgctgatataatagtccacttgaatctgaaatcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434470 atgaaaaacaacacattcttttttattgaggaagggaagtgccaaaacagaaacagaaagaagcaatgctgatataatagtccacttgaatctgaaatcc 22434569  T
Q  320 actgatgat 328  Q
    |||||||||    
T  22434570 actgatgat 22434578  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 22465752 - 22465846
Alignment:
Q  214 ataacaatgaaaaacaacacattcttttttattgaggaagggaagtgccaaaacagaaacagaaagaagcaatgctgatataatagtccacttga 308  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  22465752 ataacaatgaaaaacaacacattgttttttattgaggaagggcagtgcaaaaacaggtacagaaagaagcaatgctgatataatagtccacttga 22465846  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 22633144 - 22633218
Alignment:
Q  136 aagcaaagttcacacaacatattaatttcttacaatca-ttcaaaggaaaagatctcacaacatatattatacatc 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  22633144 aagcaaagttcacacaacatattaatttcttacaatcatttcaaagg-aaatatctcacaacatatattatacatc 22633218  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 22440548 - 22440608
Alignment:
Q  214 ataacaatgaaaaacaacacattcttttttattgaggaagggaagtgccaaaacagaaaca 274  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  22440548 ataacaatgaaaaacaacacattcttttttattgaggaatggaagtgccaaaacaggaaca 22440608  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 22448418 - 22448491
Alignment:
Q  136 aagcaaagttcacacaacatattaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatc 210  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||    
T  22448418 aagcaaagttcacacaaaatattaatttcttacaatcattc-aacaaaaggatctcacaacatatattatacatc 22448491  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 22355556 - 22355614
Alignment:
Q  229 aacacattcttttttattgaggaagggaagtgccaaaacagaaacagaaagaagcaatg 287  Q
    ||||||||  ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  22355556 aacacatttatttttattgaggaagggaagtgccaaatcaaaaacagaaagaagcaatg 22355614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 22440452 - 22440524
Alignment:
Q  136 aagcaaagttcacacaacatattaatttcttacaatcattcaaaggaaaagatctcacaacatatattatacatc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |  ||||||| |||||||||||||||||||    
T  22440452 aagcaaagttcacacaacatattaatttcttac-atcattc-aatgtgaagatctaacaacatatattatacatc 22440524  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 22465652 - 22465701
Alignment:
Q  160 atttcttacaatcattcaaaggaaaagatctcacaacatatattatacatc 210  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22465652 atttcttacaatcatttaaaggaaa-gatctcacaacatatattatacatc 22465701  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 22633283 - 22633348
Alignment:
Q  244 attgaggaagggaagtgccaaaacagaaacagaaagaagcaatgctgatataatagtccacttgaa 309  Q
    |||||||||||||||| ||||| ||  |||||||||||||||||||||| ||  ||| ||||||||    
T  22633283 attgaggaagggaagttccaaatcaagaacagaaagaagcaatgctgatctagaagttcacttgaa 22633348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 22351570 - 22351636
Alignment:
Q  136 aagcaaagttcacacaacatattaatttctta---caatcattcaaaggaaaagatctcacaacatat 200  Q
    |||||||| || || ||||||||||| |||||   ||||||||||||| |||||||||||||||||||    
T  22351570 aagcaaagctctcataacatattaatgtcttattacaatcattcaaag-aaaagatctcacaacatat 22351636  T

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