View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_11 (Length: 335)
Name: NF18435_low_11
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 142 - 302
Target Start/End: Complemental strand, 40393471 - 40393309
Alignment:
| Q |
142 |
tgcataagcagataatatat--caaagccattttctcataactattgataaaattaaagcagtaaaatttgcagtcaaggataagaatgcattgtatatc |
239 |
Q |
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| T |
40393471 |
tgcataagcagataatatatatcaatgccattttctcataactattgataaaatgaaagaagtaaaatttgcagtcaaggataagaatggattgtatatc |
40393372 |
T |
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| Q |
240 |
aaaataactttgttattccgattgaatgtaatactggatagtacaattgatttgatgataata |
302 |
Q |
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|||| |||||||||||||| |||| || ||| | ||||||| ||||||||||||||||||||| |
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| T |
40393371 |
aaaagaactttgttattcccattgcatataacattggataggacaattgatttgatgataata |
40393309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 52412097 - 52412202
Alignment:
| Q |
197 |
agcagtaaaatttgcagtcaaggataagaatgcattgtatatcaaaataactttgttattccgattgaatgtaatactggatagtacaattgatttgatg |
296 |
Q |
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| T |
52412097 |
agcagaaaaatttgcagtcaagaataagaatgaattgtatagcagaataacttttttattctcatttcatataatattggacaatacaattgatttgatg |
52412196 |
T |
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| Q |
297 |
ataata |
302 |
Q |
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||||| |
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| T |
52412197 |
ctaata |
52412202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 14676891 - 14677025
Alignment:
| Q |
168 |
cattttctcataactattgataaaattaaagcagtaaaatttgcagtcaaggataagaatgcattgtatatcaaaataactttgttattccgattgaatg |
267 |
Q |
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| T |
14676891 |
cattttttcataactattaacaatagtaaaaccgtaaaattttcaaccaagaataagtgtggactgtatatcaagagaactttattattcccattgcata |
14676990 |
T |
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| Q |
268 |
taatactggatagtacaattgatttgatgataata |
302 |
Q |
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| T |
14676991 |
taatattggatagtacaattgatttgttgataata |
14677025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 17667488 - 17667355
Alignment:
| Q |
166 |
gccattttctcataactattgataaaattaaagcagtaaaatttgcagtcaaggataagaatgcattgtatatcaaaataactttgttattccgattgaa |
265 |
Q |
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|||||||| ||||||||||| | || | |||| | ||||||||| || |||| ||||| | | |||||||||| | |||||| ||||||| |||| | |
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| T |
17667488 |
gccattttttcataactattaacaatagtaaaaccgtaaaattttcaaccaagtataagtgttgactgtatatcaagagaactttattattcccattgca |
17667389 |
T |
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| Q |
266 |
tgtaatactggatagtacaattgatttgatgata |
299 |
Q |
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| T |
17667388 |
tataatattggatagtataattgatttgttgata |
17667355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 7773733 - 7773693
Alignment:
| Q |
197 |
agcagtaaaatttgcagtcaaggataagaatgcattgtata |
237 |
Q |
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| T |
7773733 |
agcagaaaaatttgcagtcaagaataagaatgaattgtata |
7773693 |
T |
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