View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_15 (Length: 235)
Name: NF18435_low_15
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10971169 - 10970935
Alignment:
| Q |
1 |
aggtatcaacaattattctgtgttactgcttaccgtttaatttatatgatggaaaccggacactgacactttaacaccaatgatagtcgaggaaacgata |
100 |
Q |
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| T |
10971169 |
aggtatcaacaattattctgtgttactgcttaccgtttaatttatatgatggaaaccggacactgacactttaacaccgataatagtcgaggaaacgata |
10971070 |
T |
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| Q |
101 |
aattcaatgtgtcggtgccgtttgat--------------gtacaccagatacgccttcaatcagaagtgtcggtgctatgctacgaagttgttcgtcaa |
186 |
Q |
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| T |
10971069 |
aattcaatgtgtcggtgccgtttgatgtggacactaacacgtacaccagatacgccttcaatcagaagtgtcggtgctatgctacgaagttgttcgtcaa |
10970970 |
T |
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| Q |
187 |
taattctgtagtctgtgtgtttgtgtttttctgtg |
221 |
Q |
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| T |
10970969 |
taattctgtagtctgtgtgtttgtgtttttctgtg |
10970935 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 29647400 - 29647438
Alignment:
| Q |
129 |
acaccagatacgccttcaatcagaagtgtcggtgctatg |
167 |
Q |
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| T |
29647400 |
acaccagacacgtcttcaatcagaagtgtcggtgctatg |
29647438 |
T |
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