View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_3 (Length: 565)
Name: NF18435_low_3
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 18985173 - 18984638
Alignment:
| Q |
18 |
acattagtgcccgtatgcacgctagtttatcgtaatagtaatataaatcttagacggtaacttctaacggtttaaccatggaaatagttcgttgttcaag |
117 |
Q |
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| T |
18985173 |
acattagtgcccgtatgcacgctagtttatcgtaatagtaatataaatcttagacggtaacttctaacggtttaaccatggaaatagttcgttgtccaag |
18985074 |
T |
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| Q |
118 |
cttctggatcaatatctgacagtttcttttggtgcagacatttaggtaaaacaagagtggatgaaagtaggagcttgactttagactgcatcagacactc |
217 |
Q |
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| T |
18985073 |
cttctggatcaatatctgacagtttcttttggtgcagacatttaggtaaaacaagagtggatgaaagtaggagcttgactttagactgcatcagacactc |
18984974 |
T |
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| Q |
218 |
tttgattaggcaggaagatagcataatattcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcagatggt |
317 |
Q |
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| T |
18984973 |
tttgattaggcaggaagatagcataatattcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcagatggt |
18984874 |
T |
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| Q |
318 |
tttcatggctctttggttgaatatatggtccacgaaactgaaaagcttcatgcacaggtttttacatttttgaggcgatgaaaatatggaaaagaaaaga |
417 |
Q |
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| T |
18984873 |
tttcatggctctttggttgaatatatggtccacgaaactgaaaagcttcatgcacaggttgttacatttttgaggcgatgaaaatatggaaaagaaaaga |
18984774 |
T |
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| Q |
418 |
atttcgtgattaaaatttttgtgcttggcttccctttttaaattaggtgggaagatatacaagcccggatgagcatgctttcttccctacaaacttacct |
517 |
Q |
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| T |
18984773 |
atttcgtgatttaaatttttgtgcttggcttccctttttaaattaggtgggaagatatacaagcccggatgagcatgctttcttccctacaaacttacct |
18984674 |
T |
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| Q |
518 |
gagccactgcttcctcccatgaagtacccacaggtt |
553 |
Q |
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| T |
18984673 |
gagccactgcttcctcccatgaagtacccacaggtt |
18984638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 4248518 - 4248460
Alignment:
| Q |
312 |
gatggttttcatggctctttggttgaatatatggtccacgaaactgaaaagcttcatgc |
370 |
Q |
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| T |
4248518 |
gatggatttcatggctctttggtagaatacatggtcagggaaactgagaagcttcatgc |
4248460 |
T |
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