View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_5 (Length: 435)
Name: NF18435_low_5
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 3526879 - 3526478
Alignment:
| Q |
18 |
agtagcaatacttgaatttgcattgtgttttgtgataaatagagaagaaaataagttaaaaacaaaagacaaagcgtttatcatcataagtttctatgta |
117 |
Q |
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| T |
3526879 |
agtagcaatacttgaatttgcattgtgttttgtgataa-tagagaagaaaataagttaaaaacacaagacaaagcgtttatcatcttaagtttctatgta |
3526781 |
T |
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| Q |
118 |
tatgttatttctataagaacttataaatattattcattcgatcagctaactttgaggaacctgaataaatctaatgagtgtttgattttttcccccggat |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
3526780 |
tatgttatttctagaagaacttataaatattattcattcgatcagctaactgtgaggaaccttaataaatctaatgagtgtttgattttttcccccagat |
3526681 |
T |
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| Q |
218 |
tttgttgaacaaatcttacactagacaagcaaatggcaaagtgcacacacaaaaccctttatagtaactaatcaattaaataaaaccattaaattatttt |
317 |
Q |
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| T |
3526680 |
tttgttgaacaaatcttacactagacaaacaaatggcaaagtgcacacataaaaccctttatagtaactaatcaattaaataaaaccattaaattatttt |
3526581 |
T |
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| Q |
318 |
taaaccactactaatcaat--aagtgaacacataaaaaaccctttaaagtacacacaagaatatcacgtttgtcacggtaaatatttttgtagaagctag |
415 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3526580 |
taaaccactactaaacaattaaagtgaacacataaaaaaccctttaaagtacacacaagaatatcacgtttgtcacggtaaatatttttgtagaagctag |
3526481 |
T |
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| Q |
416 |
aag |
418 |
Q |
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| T |
3526480 |
aag |
3526478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 297
Target Start/End: Complemental strand, 3526265 - 3526115
Alignment:
| Q |
149 |
attcattcgatcagctaactttgaggaacctgaataaatctaatgagtgtttgattttttccc--ccggattttgttgaacaaatcttacactagacaag |
246 |
Q |
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||||||| |||||| ||||| |||||||||| |||| ||||| ||||||| ||||||||| | || ||||||||||||||||||||||||||| ||| |
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| T |
3526265 |
attcattggatcagttaactgtgaggaaccttaatagatctagtgagtgtatgattttttttcttccagattttgttgaacaaatcttacactaggcaaa |
3526166 |
T |
|
| Q |
247 |
caaatggcaaagtgcacacacaaaaccctttatagtaactaatcaattaaa |
297 |
Q |
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|||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
3526165 |
caaatgacaaagtgcacgcataaaaccctttatagtaactaatcaattaaa |
3526115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 3525827 - 3525768
Alignment:
| Q |
349 |
aaaaaaccctttaaagtacacacaagaatatcac--gtttgtcacggtaaatatttttgt |
406 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
3525827 |
aaaaaaccctttaaagtgcacacaagaatatcacgtgtttgtcactataaatatttttgt |
3525768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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