View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_7 (Length: 382)
Name: NF18435_low_7
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 22434963 - 22434583
Alignment:
| Q |
1 |
cttgtaaagagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaatattttttacaacaattgatagagcgcggg |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434963 |
cttgtaaggagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaatattttttacaacaattgatagagcgcggg |
22434864 |
T |
|
| Q |
101 |
gcgtatactagagagcattgttcctgatgaaggagaagagcattggatcttcgagtggaaaaaatggtatgcttaaatttctaaccaatttgaaagnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434863 |
gcgtatactagagagcattgttcctgatgaaggagaagtgcattggatcttcgagtggaaaaaatggtatgcttaaatttctaaccaatttgaaagaaaa |
22434764 |
T |
|
| Q |
201 |
nnnnnttgaagtaatatttactgcttagtcattaaagtacaagcattatgtaatttttaaaagggctaatttttccaatcattatatgaaactatttttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
22434763 |
aaaaattgaagtaatatttactgcttagtcattaaagtacaagcattatgtaatttttaaaagggctaatttttccaatccttatattaaactatttttt |
22434664 |
T |
|
| Q |
301 |
gaatggcatcttatattaaactgtctagtcattgtaatgattgtgtttcatattgataatttggtgtgaactacaggtgat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22434663 |
gaatggcatcttatattaaactgtctagtcattgtaatgattgtgtttcatattgatattttggtgtgaactacaggtgat |
22434583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 22440758 - 22440644
Alignment:
| Q |
270 |
tttttccaatcattatatgaaac-tattttttgaatggcatc-ttatattaaactgtctagtcattgtaatgattgtgtttcatattgataatttggtgt |
367 |
Q |
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||||||||||| |||||| || | | |||||| ||||||||| |||||||||| ||| ||||||||||| |||||||||| ||||||||||||||| | |
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| T |
22440758 |
tttttccaatccttatattaagcgtttttttttaatggcatccttatattaaattgtacagtcattgtaacgattgtgttttatattgataatttggatt |
22440659 |
T |
|
| Q |
368 |
gaactacaggtgatg |
382 |
Q |
| |
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||||| ||||||||| |
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| T |
22440658 |
gaactgcaggtgatg |
22440644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 22429907 - 22429844
Alignment:
| Q |
8 |
agagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaat |
71 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
22429907 |
agagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaat |
22429844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 22466002 - 22465934
Alignment:
| Q |
260 |
aaagggctaatttttccaatcattatatgaaactattttt-tgaatggca-tcttatattaaactgtcta |
327 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||| |
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|
| T |
22466002 |
aaagggctaatttt-ccaatcattatattaaactatttttctgaatggcattcttatatgaaactgtcta |
22465934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 22429907 - 22429867
Alignment:
| Q |
112 |
agagcattgttcctgatgaaggagaagagcattggatcttc |
152 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22429907 |
agagcattgttcccgatgaaggagaagagcattggatcttc |
22429867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 22366249 - 22366186
Alignment:
| Q |
8 |
agagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaat |
71 |
Q |
| |
|
||||||||| ||||||| ||||| || |||||| |||||||||||||||||||| | ||||||| |
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| T |
22366249 |
agagcattgctcctgataaaggaaaagagcattggatcttcaagcaagtgccctttgtagaaat |
22366186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 22633780 - 22633716
Alignment:
| Q |
8 |
agagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaata |
72 |
Q |
| |
|
||||||||| |||| |||||||| || |||||| ||| |||||||||||||||| | |||||||| |
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|
| T |
22633780 |
agagcattgctcctaatgaaggaaaagagcattggatattcaagcaagtgccctttgtagaaata |
22633716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 22352156 - 22352093
Alignment:
| Q |
8 |
agagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaat |
71 |
Q |
| |
|
||||||||| ||||||||||||| || | | || ||||||||| |||||||||||| ||||||| |
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| T |
22352156 |
agagcattgctcctgatgaaggaaaagaacgttggatcttcaaccaagtgccctctgtagaaat |
22352093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 22429802 - 22429755
Alignment:
| Q |
212 |
taatatttactgcttagtcattaaagtacaagcattatgtaattttta |
259 |
Q |
| |
|
||||||||| || |||||||| ||| |||||||||||||||||||||| |
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| T |
22429802 |
taatatttattgtttagtcatgaaaatacaagcattatgtaattttta |
22429755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 22633420 - 22633378
Alignment:
| Q |
340 |
attgtgtttcatattgataatttggtgtgaactacaggtgatg |
382 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
22633420 |
attgtgttttatattaataatttggtgtgaactgcaggtgatg |
22633378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 22366249 - 22366209
Alignment:
| Q |
112 |
agagcattgttcctgatgaaggagaagagcattggatcttc |
152 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||| |
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|
| T |
22366249 |
agagcattgctcctgataaaggaaaagagcattggatcttc |
22366209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 22448667 - 22448635
Alignment:
| Q |
350 |
atattgataatttggtgtgaactacaggtgatg |
382 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
22448667 |
atattgataatttggtgtgaactgcaggtgatg |
22448635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 22628685 - 22628653
Alignment:
| Q |
350 |
atattgataatttggtgtgaactacaggtgatg |
382 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
22628685 |
atattgataatttggtgtgaactgcaggtgatg |
22628653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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