View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18435_low_9 (Length: 348)
Name: NF18435_low_9
Description: NF18435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18435_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 42834106 - 42834430
Alignment:
| Q |
9 |
attatactccatcttggaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggt |
108 |
Q |
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| T |
42834106 |
attatactccatattggaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggt |
42834205 |
T |
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| Q |
109 |
ggtttctacaaacgtgggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaa |
208 |
Q |
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| T |
42834206 |
ggtttctacaaacgtgggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaa |
42834305 |
T |
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| Q |
209 |
caaaactatatggacaatagaagttatgatgatttgatcnnnnnnnttattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcag |
308 |
Q |
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| T |
42834306 |
caaaacgatatggacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcag |
42834405 |
T |
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| Q |
309 |
aagaagagaatataaagttgaaggt |
333 |
Q |
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| T |
42834406 |
aagaagagaatataaagttgaaggt |
42834430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 42843043 - 42843155
Alignment:
| Q |
221 |
gacaatagaagttatgatgatttgatcnnnnnnnttattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
320 |
Q |
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| T |
42843043 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
42843142 |
T |
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| Q |
321 |
taaagttgaaggt |
333 |
Q |
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| T |
42843143 |
taaagttgaaggt |
42843155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 42819167 - 42819234
Alignment:
| Q |
266 |
gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggt |
333 |
Q |
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| T |
42819167 |
gaggaagagctaagagttaccaatttaaagcttcaactttcggaaaaagaggttatcaacttgaaggt |
42819234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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