View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_high_12 (Length: 233)
Name: NF18436_high_12
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 50387169 - 50386947
Alignment:
| Q |
13 |
ttcatttcagataaaggaaaaaagatacaatgatttcttcaagnnnnnnnnnnnnnn--tacaagaatgatcaatcatgtcaaccacaacgataattttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50387169 |
ttcatttcagataaaggaaaaaagatacaatgatttcttcaagaaaaagaaaaaaaaaatacaagaatgatcaatcatgtcaaccacaacgataattttc |
50387070 |
T |
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| Q |
111 |
atcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattcatcattttcatcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50387069 |
atcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattcatcattttcatcat |
50386970 |
T |
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| Q |
211 |
cactgttatttccaagtcttttt |
233 |
Q |
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|||||| |||||||||||||||| |
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| T |
50386969 |
cactgtgatttccaagtcttttt |
50386947 |
T |
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