View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_high_2 (Length: 551)
Name: NF18436_high_2
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 35035636 - 35036145
Alignment:
| Q |
18 |
attacaggcttacagctctaacaataatttctaacgccaattatggatgtgatgaataatttgttctcactatcaacattgccatttacaatctgcattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035636 |
attacaggcttacagctctaacaataatttctaacgccaattatggatgtgatgaataatttgttctcactatcaacattgccatttacaatctgcattt |
35035735 |
T |
|
| Q |
118 |
tgttgcttctctttgttctcttttcactacgtagaagcaatattactacgggtgcagcttcaatgacaccaccaccaccacccgaagctgctggcgcttg |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35035736 |
tgttgcttctctttgttctcttttcgctacgtagaagcaatattactacgggtgcagcttcaatgacacc------accacccgaagctgctggcgcttg |
35035829 |
T |
|
| Q |
218 |
gcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35035830 |
gcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagtgcgt |
35035929 |
T |
|
| Q |
318 |
ttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035930 |
ttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctatag |
35036029 |
T |
|
| Q |
418 |
cctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctatc |
517 |
Q |
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| T |
35036030 |
cctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtcctctc |
35036129 |
T |
|
| Q |
518 |
agctcaacgaatagat |
533 |
Q |
| |
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|||||||||||||||| |
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| T |
35036130 |
agctcaacgaatagat |
35036145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 216 - 533
Target Start/End: Original strand, 35019629 - 35019946
Alignment:
| Q |
216 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgc |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||||||||||| | |
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| T |
35019629 |
tggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttc |
35019728 |
T |
|
| Q |
316 |
gtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatctat |
415 |
Q |
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| T |
35019729 |
gtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatctat |
35019828 |
T |
|
| Q |
416 |
agcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtccta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||| || |||||||| || ||||| |
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| T |
35019829 |
agcctttgaaatcatgggttataactcttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaattgccactgttcatgtcctc |
35019928 |
T |
|
| Q |
516 |
tcagctcaacgaatagat |
533 |
Q |
| |
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||||||||||| |||||| |
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| T |
35019929 |
tcagctcaacggatagat |
35019946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 174 - 533
Target Start/End: Original strand, 35029678 - 35030038
Alignment:
| Q |
174 |
gcttcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcacct |
273 |
Q |
| |
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||||||| |||||||||||| || || ||||| || || ||||| ||||| ||||||||||||||||||||||| ||||||| |||| | | |||| |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttacct |
35029777 |
T |
|
| Q |
274 |
tgggaaacttagccgacaaatacggagccatc-ttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtt |
372 |
Q |
| |
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| |||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||| ||||||| ||||| | | ||| |||| |
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| T |
35029778 |
taggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtt |
35029877 |
T |
|
| Q |
373 |
tcactgtaaacgacaaagcctttgcttctcgtcccaaatctatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttc |
472 |
Q |
| |
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|||| ||||| |||||| | |||||||| ||||| |||||| |||||||||||| | || ||||||| ||||||| | ||| | ||||| || ||||| |
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| T |
35029878 |
tcaccgtaaatgacaaaacttttgcttcacgtccgaaatctgcagcctttgaaattttagggtataacttttccatgataggtttcagtccttatggttc |
35029977 |
T |
|
| Q |
473 |
ttattggcgtacattgcgtaagatcgccactgtccacgtcctatcagctcaacgaatagat |
533 |
Q |
| |
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||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||| |||||| |
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| T |
35029978 |
ttattggcgtacagtgcgtaaaatcgccaccgtccatgtcctctcagctcaacggatagat |
35030038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 213 - 514
Target Start/End: Original strand, 35043986 - 35044287
Alignment:
| Q |
213 |
gcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccg |
312 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||| | |||| || ||||||| || || ||||||| ||||||||| | ||||||||| |
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| T |
35043986 |
gcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacct |
35044085 |
T |
|
| Q |
313 |
tgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatc |
412 |
Q |
| |
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| ||||| |||||||| ||| ||||| | |||||||| ||||| || | ||| || |||||||||||||| | |||||||||||||||||||||||| |
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| T |
35044086 |
ttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgcttctcgtcccaaatc |
35044185 |
T |
|
| Q |
413 |
tatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtc |
512 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||||| | ||| | ||||| |||||||| |||||||| ||| |||||||||| |||| |||||||| |
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| T |
35044186 |
tatagcctttgaaattttgggatataacttttccatgataggtttcagtccttacggttcctattggcgcacagtgcgtaagatatccaccatccacgtc |
35044285 |
T |
|
| Q |
513 |
ct |
514 |
Q |
| |
|
|| |
|
|
| T |
35044286 |
ct |
35044287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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