View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_10 (Length: 256)
Name: NF18436_low_10
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 15020713 - 15020949
Alignment:
| Q |
9 |
cgtaggtcttgcatttggtatattgtagttacaatttctttagaccttacacatgtgaaagttcaattgattttgcatttgttcagggaatctctgtctc |
108 |
Q |
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| T |
15020713 |
cgtaggtcttgcatttggtatattgtagttacaatttctttagaccttacacatgtgaaagttcaattgattttgcatttgttcagggcatctttgtctc |
15020812 |
T |
|
| Q |
109 |
atgatattagcttttccttgtttatttggcccaggaatccatagtttatacaaattatatatttgcaggttctcacaatttcatgattaaagatttcagc |
208 |
Q |
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| T |
15020813 |
atgatattagcttttccttgtttatttggcccaggaatccatagtttatacaaattatatatttgcaggttctcacaatttcatgattaaagatttcagc |
15020912 |
T |
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| Q |
209 |
tttagacttgtaaatgcatcttttaactacttttcct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
15020913 |
tttagacttgtaaatgcatcttttaactacttttcct |
15020949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 15003233 - 15002993
Alignment:
| Q |
1 |
ttttgttgcgtaggtcttgcatttggtatattgtagttacaatttctttagaccttacacatgtgaaagttcaattgattttgcatttgttcagggaatc |
100 |
Q |
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||||| ||| |||||||||||||| |||||||||||| ||||| | || ||||||| ||||||||||||||| || | ||||||||| | ||||||| |
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| T |
15003233 |
ttttgatgcataggtcttgcatttagtatattgtagtgacaatcttttcagaccttgttcatgtgaaagttcaaatggtcttgcatttggttagggaatg |
15003134 |
T |
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| Q |
101 |
tctgtctcatgatattagcttttccttgtttatttggcccaggaatccatagtttatacaaattatatatttgcaggttctcacaatttcatgattaaag |
200 |
Q |
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| T |
15003133 |
t-tgtctcatggtattagttcttc-ttgtttatttggctcaataatccatagtatctacagattatatat--gcaggttctcacaatttcacgattaaag |
15003038 |
T |
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| Q |
201 |
atttcagctttagacttgtaaatgcatcttttaactacttttcct |
245 |
Q |
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| T |
15003037 |
cttttagctttagacttgtaaatgcatcttttaactacttatcct |
15002993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 15014219 - 15014456
Alignment:
| Q |
11 |
taggtcttgcatttggtatattgtagttacaatttctttagacctt--ac------acatgtgaaagttcaattgattttgcatttgttcagggaatctc |
102 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||||| || | ||||||||| || | |||| |
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| T |
15014219 |
taggtcttgcattttgtatatagtagttacaatttctttagaccttgtactgttgtacatgtgaaagttcaaatggtcttgcatttggtctgagaatgct |
15014318 |
T |
|
| Q |
103 |
tgtctcatgatattagcttttccttgtttatttggcccaggaatccatagtttatacaaattatatatttgcaggttct-cacaatttcatgattaaaga |
201 |
Q |
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| T |
15014319 |
tgtctcatcctgttagttcttctttgtttatttggcccaagaatccatagtatatacaaattacatat--gcagattcttcatgattgaa-gctttcagc |
15014415 |
T |
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| Q |
202 |
tttcagctttagacttgtaaatgcatcttttaactactttt |
242 |
Q |
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| T |
15014416 |
tttcagctttagacttgtaaatgcatcttttaactactttt |
15014456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 15024745 - 15024982
Alignment:
| Q |
11 |
taggtcttgcatttggtatattgtagttacaatttctttagacctt--ac------acatgtgaaagttcaattgattttgcatttgttcagggaatctc |
102 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| || | ||||||||| || | || | |
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| T |
15024745 |
taggtctt-cattttgtatattgtagttacaatttctttagaccttgtactgttgtacatgtgaaagttcaaatggtcttgcatttggtctgagattgct |
15024843 |
T |
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| Q |
103 |
tgtctcatgatattagcttttccttgtttatttggcccaggaatccatagtttatacaaattatatatttgcaggttctca-----caatttcatgatta |
197 |
Q |
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| T |
15024844 |
tgactcatggtgttagtt----cttgtttatttggcccaagaatccatagtgtatacaaattacatat--gcagattctccaatctcaatttcatgatta |
15024937 |
T |
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| Q |
198 |
aagatttcagctttagacttgtaaatgcatcttttaactactttt |
242 |
Q |
| |
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|| ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
15024938 |
tagctttcatctttagacttgtaaatgcatcctttaactactttt |
15024982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 15009290 - 15009407
Alignment:
| Q |
41 |
aatttctttagaccttacacatgtgaaagttcaattgattttgcatttgttcagggaatctctgtctcatgatattagcttttccttgtttatttggccc |
140 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| || | |||||||| || |||||| | ||||||||| | |||| |||||||||||||| ||| || |
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| T |
15009290 |
aatttctttaggccttatacatgtgaaagttcaaatggtcttgcatttagtccgggaatgtttgtctcatggtgttagtttttccttgtttatgtgg-cc |
15009388 |
T |
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| Q |
141 |
aggaatccatagtttatac |
159 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
15009389 |
aagaatccatagtatatac |
15009407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 15009443 - 15009483
Alignment:
| Q |
202 |
tttcagctttagacttgtaaatgcatcttttaactactttt |
242 |
Q |
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| T |
15009443 |
tttcagctttagacttgtaaatgcaccttttaactactttt |
15009483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 14544298 - 14544386
Alignment:
| Q |
155 |
tatacaaattatatatttgcaggttctcacaatttcatgattaaagatttcagctttagacttgtaaatgcatcttttaactacttttcct |
245 |
Q |
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|||||||||||||||| ||||| || || |||||||||||||| ||||||| ||||||| |||| |||||| || ||| ||||||||| |
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| T |
14544298 |
tatacaaattatatat--gcaggctcacatgttttcatgattaaagctttcagccttagactggtaagtgcatccttgaacaacttttcct |
14544386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 29468918 - 29468779
Alignment:
| Q |
11 |
taggtcttgcatttggtatattgtagttacaatttctttagaccttacacatgtgaaagttcaattgattttgcatttgttcagggaatctctgtctcat |
110 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||| | | ||| |||||||||||||||| || | || |||||| ||| ||||| | |||||||| |
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| T |
29468918 |
taggtcttgcatttagtatattgtagtgacaatttcttcaaaacttgtacatgtgaaagttcaaatggtatttcatttggtcaaggaatgtttgtctcat |
29468819 |
T |
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| Q |
111 |
gatattagcttttccttgtttatttggcccaggaatccat |
150 |
Q |
| |
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| T |
29468818 |
ggtattagttcttctttgtttatttggcccaataatccat |
29468779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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