View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_12 (Length: 246)
Name: NF18436_low_12
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31884906 - 31885133
Alignment:
| Q |
1 |
aaaattctgaaaacccctctccttcattctgttagagaagataaattattttggaaacacagaaaaaatggtgagtactatgttaacagtgcataccatt |
100 |
Q |
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| T |
31884906 |
aaaattctgaaaacccctctccttcattctgttagagaagataaattattttggaaacacagaaaaaatggtgagtactatgttaacagtgcataccatt |
31885005 |
T |
|
| Q |
101 |
ttgttgttaacaaaactatagatacggattttcttcttctcaatggaaaatgacagttaatttggcgtgcaaaaatcccaccaaaagtgaagaatttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31885006 |
ttgttgttaacaaaactatagatacggattttcttcttctcaatggaaaatgacagttaatttggcgtgcaaaaatcccaccaaaagtgaagaatctatt |
31885105 |
T |
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| Q |
201 |
gcggcttatttgtagaaatgtgttgccc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31885106 |
gcggcttatttgtagaaatgtgttgccc |
31885133 |
T |
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