View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_3 (Length: 443)
Name: NF18436_low_3
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 32809350 - 32809751
Alignment:
| Q |
12 |
cacagaactaggtctttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcgataagcataacaagt |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
32809350 |
cacagaactaggtttttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcaataagcataaaaagt |
32809449 |
T |
|
| Q |
112 |
cctactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccagatacagtataaggccaattgaagcatgaccgggtagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||| |
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| T |
32809450 |
cctactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccaggtacactataaggccaatcgaagcatgaccgagtagaa |
32809549 |
T |
|
| Q |
212 |
acttcctagttatggacaaaatctcaatcctgtgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagc-----tacagagcca |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32809550 |
acttcctagttaaggacaaaatctcaatcctgtgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagcca |
32809649 |
T |
|
| Q |
307 |
cttccact---nnnnnnnngcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatt |
403 |
Q |
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| T |
32809650 |
cttccactaaaaaaaaaaagcaccacattgacgccttcttgcgaattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatt |
32809749 |
T |
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| Q |
404 |
tc |
405 |
Q |
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|| |
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| T |
32809750 |
tc |
32809751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 32802790 - 32803102
Alignment:
| Q |
14 |
cagaactaggtctttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcgataagcataacaagtcc |
113 |
Q |
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| T |
32802790 |
cagaattaggcccttcattattatcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtcc |
32802889 |
T |
|
| Q |
114 |
tactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccagatacagtataaggccaattga---------agcatgaccg |
204 |
Q |
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||| |||||||||||||||||||| ||||| ||| || || || ||||||||| |||| |||| | |||| ||| |||| |||| |||| |
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| T |
32802890 |
aactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaacctggtggagcaggacca |
32802989 |
T |
|
| Q |
205 |
ggtagaaacttcctagttatggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctacag |
301 |
Q |
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| T |
32802990 |
ggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacag |
32803089 |
T |
|
| Q |
302 |
agccacttccact |
314 |
Q |
| |
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||||||||||||| |
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| T |
32803090 |
agccacttccact |
32803102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 32803243 - 32803294
Alignment:
| Q |
357 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcgac |
408 |
Q |
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| T |
32803243 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgac |
32803294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 16578652 - 16578604
Alignment:
| Q |
357 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc |
405 |
Q |
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| T |
16578652 |
tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttc |
16578604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 392
Target Start/End: Original strand, 3332399 - 3332434
Alignment:
| Q |
357 |
tgtttttggatccaggtggtcttcctcttggtcttc |
392 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
3332399 |
tgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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