View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_4 (Length: 434)
Name: NF18436_low_4
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Original strand, 6860341 - 6860763
Alignment:
| Q |
13 |
tcatcagttttgacatcttgtatgttcattaaccatctactaaatgtaattaaccgcctatttgaagtctatttgactctaatgtaatga---------- |
102 |
Q |
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| T |
6860341 |
tcatgagttttgacatcttgtacgttcattaaccatctactaaatgtaattaaccgcctatttgaagtctatttgactctaatgtaatgactataaaatg |
6860440 |
T |
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| Q |
103 |
-aagttggttgaagagatatattaaatgttcatgaaaaatgaatagaaaaagataaacattaataatgttgggatatctctccttagataattgatcaac |
201 |
Q |
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| T |
6860441 |
aaagtttgttgaagagatatattaaatgttcatgaaaaatgaatagaaaaggataaacatttttaatgctgggatatctctccttaggtaattgatcaac |
6860540 |
T |
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| Q |
202 |
ttatcagtatcatgcagtgttattgtttgttatagatttgttcagatatagtattgacgtatatgattgaagaaactgtatctatggtatcactttttca |
301 |
Q |
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| T |
6860541 |
ttatcagtatcatgcagtgtgattatttgttatagatttgttcagatatagtattgacgtctatgattgaagaaactgtatctatggtatcactttttca |
6860640 |
T |
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| Q |
302 |
tttgacaattcaagtatatatcataaaataatctccaaagtatgatgaccaagcttagttttgtgttttagtgatgactttggtttactattttctgata |
401 |
Q |
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| T |
6860641 |
tttgacaattcaagtatatatcataaaataatctccaaagtatgatgaccaagcttagttttgtgttttagtgatgactttggtttactattttctgata |
6860740 |
T |
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| Q |
402 |
tatttttcacacttctccctatg |
424 |
Q |
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| T |
6860741 |
tatttttcacacttctccctatg |
6860763 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 39370433 - 39370393
Alignment:
| Q |
38 |
tcattaaccatctactaaatgtaattaaccgcctatttgaa |
78 |
Q |
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| T |
39370433 |
tcattaaccatctactaaatgtgattaaccacatatttgaa |
39370393 |
T |
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