View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_5 (Length: 371)
Name: NF18436_low_5
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 43674465 - 43674122
Alignment:
| Q |
18 |
aagggaaataaagcaaacacatttaattgaataattattatatttggcgattgnnnnnnncagaagtgagttgtagcgccgccacattaaatgtttgtcg |
117 |
Q |
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| T |
43674465 |
aagggaaataaagcaaacacatttaattgaataattattatatttggcgattgaagaaaacagaagtgagttgtagcgccgccacattaaatgtttgtcg |
43674366 |
T |
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| Q |
118 |
tattctaatattttacgtcagtgtcacgagttgtagtgccaccataatcaatgtttgttgtattccaatgtgccaacataaacaaaaggtttgagccagt |
217 |
Q |
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| T |
43674365 |
tattctaatattttacgtcagtgtcacgagttgtagtgccaccataatcaatgtttgttgtattccaatgtgccaacataaacaaaaggtttgagccagt |
43674266 |
T |
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| Q |
218 |
tacaaatgttgtttgcttctcaagagattcactagaacagaagccatctatcgcaccagaccatgtgttactctccaccactcgcatcaaacctaggtga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43674265 |
tacaaatgttgtttgcttctcaagagattcactagaacagaagccatctatcgcaccagaccatgtgttactctccaccactcgcatcaaacctaggtga |
43674166 |
T |
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| Q |
318 |
ttctaggcaactgaagctcaaatttggcgttagatatgatgatg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43674165 |
ttctaggcaactgaagctcaaatttggcgttagatatgatgatg |
43674122 |
T |
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