View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18436_low_6 (Length: 369)

Name: NF18436_low_6
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18436_low_6
NF18436_low_6
[»] chr2 (3 HSPs)
chr2 (181-353)||(127567-127740)
chr2 (191-269)||(127088-127166)
chr2 (154-183)||(127754-127783)
[»] chr4 (3 HSPs)
chr4 (17-153)||(37737217-37737354)
chr4 (153-183)||(25055108-25055138)
chr4 (154-183)||(34941502-34941531)
[»] chr5 (7 HSPs)
chr5 (181-334)||(2028900-2029052)
chr5 (191-269)||(2028390-2028468)
chr5 (153-183)||(27345938-27345968)
chr5 (153-183)||(40372179-40372209)
chr5 (154-183)||(29594906-29594935)
chr5 (154-182)||(24565573-24565601)
chr5 (154-182)||(24606609-24606637)
[»] chr7 (6 HSPs)
chr7 (181-297)||(46491059-46491175)
chr7 (198-297)||(29685090-29685189)
chr7 (191-269)||(46491605-46491683)
chr7 (13-66)||(40682543-40682597)
chr7 (152-183)||(17114143-17114174)
chr7 (152-182)||(36611514-36611544)
[»] chr6 (1 HSPs)
chr6 (198-249)||(29333513-29333564)
[»] chr3 (4 HSPs)
chr3 (193-269)||(2226617-2226693)
chr3 (152-183)||(20807935-20807966)
chr3 (154-183)||(49350289-49350318)
chr3 (155-183)||(54308454-54308482)
[»] chr1 (5 HSPs)
chr1 (193-269)||(16449610-16449685)
chr1 (193-269)||(16459184-16459259)
chr1 (152-183)||(16449553-16449584)
chr1 (152-183)||(16459127-16459158)
chr1 (154-183)||(26240890-26240919)
[»] chr8 (1 HSPs)
chr8 (145-183)||(5434023-5434061)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 181 - 353
Target Start/End: Complemental strand, 127740 - 127567
Alignment:
Q  181 aagcacaaataaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaattatgtccttat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  127740 aagcacaaataaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacatccatctttttccacacacaattatgtccatat 127641  T
Q  281 ctctatcctctccaactatttttccacacatatcatctccaacttgagtagatg-agaactagtgtgtggtttt 353  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  127640 ctctatcctctccaactatttttccacgcatatcatctccaacttgagtagatgcagaactagtgtgtggtttt 127567  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 127088 - 127166
Alignment:
Q  191 aaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaat 269  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||| || |||||||| |  | ||||||||||||||    
T  127088 aaaataccatttgattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaat 127166  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 127783 - 127754
Alignment:
Q  154 ggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||    
T  127783 ggtggattctagggtgagggttcaattaag 127754  T

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Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 37737354 - 37737217
Alignment:
Q  17 tccaccgccaccaaaa-tgaactgagtaaaatgatttgagacatcgaacgggtcatttttattgatgatattcattaaagatgtgacagagtttaattag 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37737354 tccaccgccaccaaaaatgaactgagtaaaatgatttgagacatcgaacgggtcatttttattgatgatattcattaaagatgtgacagagtttaattcg 37737255  T
Q  116 acgacagaaaaaatgaaatatttcttaatgaataacat 153  Q
     ||||||||||||| |||||||||||||||||||||||    
T  37737254 gcgacagaaaaaataaaatatttcttaatgaataacat 37737217  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 183
Target Start/End: Original strand, 25055108 - 25055138
Alignment:
Q  153 tggtggattctagggtgagggttcaattaag 183  Q
    |||||||||||||||||||||||||||||||    
T  25055108 tggtggattctagggtgagggttcaattaag 25055138  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 34941502 - 34941531
Alignment:
Q  154 ggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||    
T  34941502 ggtggattctagggtgagggttcaattaag 34941531  T

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Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 2029052 - 2028900
Alignment:
Q  181 aagcacaaataaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaattatgtccttat 280  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||    
T  2029052 aagcacaaataaaacaacatttaattgaatcaatggtccacattatttgaaaataaataggagaacatccatctttttacacacacaattatgtccatat 2028953  T
Q  281 ctctatcctctccaactatttttccacacatatcatctccaacttgagtagatg 334  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||||| |||||    
T  2028952 ctctatcctttccaactatttttccgcgcatatcatctcc-acttgagaagatg 2028900  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 2028390 - 2028468
Alignment:
Q  191 aaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaat 269  Q
    |||||||||||||||| ||| | ||||||| |||||||||||||||| || |||||||| |  | ||||||||||||||    
T  2028390 aaaacaccatttgattaaattattggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaat 2028468  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 27345968 - 27345938
Alignment:
Q  153 tggtggattctagggtgagggttcaattaag 183  Q
    |||||||||||||||||||||||||||||||    
T  27345968 tggtggattctagggtgagggttcaattaag 27345938  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 40372209 - 40372179
Alignment:
Q  153 tggtggattctagggtgagggttcaattaag 183  Q
    |||||||||||||||||||||||||||||||    
T  40372209 tggtggattctagggtgagggttcaattaag 40372179  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 29594906 - 29594935
Alignment:
Q  154 ggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||    
T  29594906 ggtggattctagggtgagggttcaattaag 29594935  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 24565573 - 24565601
Alignment:
Q  154 ggtggattctagggtgagggttcaattaa 182  Q
    |||||||||||||||||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaa 24565601  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 24606609 - 24606637
Alignment:
Q  154 ggtggattctagggtgagggttcaattaa 182  Q
    |||||||||||||||||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaa 24606637  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 46491059 - 46491175
Alignment:
Q  181 aagcacaaataaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaattatgtccttat 280  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     
T  46491059 aagcacaaataaaacatcatttaattaactcaatggtccacattatttgaaaataaatatgagaacatccatctttttccacacacaattatgtccatac 46491158  T
Q  281 ctctatcctctccaact 297  Q
    |||||||||||||||||    
T  46491159 ctctatcctctccaact 46491175  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 29685189 - 29685090
Alignment:
Q  198 catttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaattatgtccttatctctatcctctccaact 297  Q
    |||| |||||||||||||| | | |||||||||||||||| |  |||||||| ||   ||||||||||||||||||||| ||||||||||||||||||||    
T  29685189 cattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacacacaattatgtccatatctctatcctctccaact 29685090  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 46491683 - 46491605
Alignment:
Q  191 aaaacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaat 269  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||| || |||||||| |  | ||||||||||||||    
T  46491683 aaaataccatttgattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaat 46491605  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 40682597 - 40682543
Alignment:
Q  13 gagatccaccgccaccaaaa-tgaactgagtaaaatgatttgagacatcgaacgg 66  Q
    ||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||    
T  40682597 gagatcctccgccaccaaaaatgaactgagtataatgatctgagacatcgaacgg 40682543  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 17114143 - 17114174
Alignment:
Q  152 atggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||||    
T  17114143 atggtggattctagggtgagggttcaattaag 17114174  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 36611544 - 36611514
Alignment:
Q  152 atggtggattctagggtgagggttcaattaa 182  Q
    |||||||||||||||||||||||||||||||    
T  36611544 atggtggattctagggtgagggttcaattaa 36611514  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 29333513 - 29333564
Alignment:
Q  198 catttgattgaatcaatggtccacattatttgaaaataaatatgagaacatt 249  Q
    |||| ||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  29333513 cattagatcgaatcaatggtccaaattatttgaaaataaatataagaacatt 29333564  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 2226693 - 2226617
Alignment:
Q  193 aacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattca-tctttttccacacacaat 269  Q
    |||||||||||||||||||||||||| | ||| ||| || | ||||||||||||||| | || |||||||||||||||    
T  2226693 aacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattccttttccacacacaat 2226617  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 20807935 - 20807966
Alignment:
Q  152 atggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||||    
T  20807935 atggtggattctagggtgagggttcaattaag 20807966  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 49350318 - 49350289
Alignment:
Q  154 ggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||    
T  49350318 ggtggattctagggtgagggttcaattaag 49350289  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 54308454 - 54308482
Alignment:
Q  155 gtggattctagggtgagggttcaattaag 183  Q
    |||||||||||||||||||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaag 54308482  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 16449610 - 16449685
Alignment:
Q  193 aacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaat 269  Q
    |||||||||||||||||||||||||| | ||| ||| || | ||||||||||||||| ||   ||||||||||||||    
T  16449610 aacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattcctttccacacacaat 16449685  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 16459184 - 16459259
Alignment:
Q  193 aacaccatttgattgaatcaatggtccacattatttgaaaataaatatgagaacattcatctttttccacacacaat 269  Q
    |||||||||||||||||||||||||| | ||| ||| || | ||||||||||||||| ||   ||||||||||||||    
T  16459184 aacaccatttgattgaatcaatggtcaagattgttt-aagaaaaatatgagaacatttattcctttccacacacaat 16459259  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 16449553 - 16449584
Alignment:
Q  152 atggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||||    
T  16449553 atggtggattctagggtgagggttcaattaag 16449584  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 16459127 - 16459158
Alignment:
Q  152 atggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||||    
T  16459127 atggtggattctagggtgagggttcaattaag 16459158  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 26240919 - 26240890
Alignment:
Q  154 ggtggattctagggtgagggttcaattaag 183  Q
    ||||||||||||||||||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaag 26240890  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 5434023 - 5434061
Alignment:
Q  145 gaataacatggtggattctagggtgagggttcaattaag 183  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  5434023 gaataagatggtggattctagggtgagggtccaattaag 5434061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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