View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18436_low_7 (Length: 367)
Name: NF18436_low_7
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 39 - 350
Target Start/End: Complemental strand, 3826588 - 3826277
Alignment:
| Q |
39 |
actatgtattctcattcgcaatgaaaactgtgacgttacatgtttatatactactacatatgtgagttacttgctatacaagtaatcaaccaaaactaaa |
138 |
Q |
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| T |
3826588 |
actatgtattctcattcgcaatgaaaattgtgacgttgcatgtttatatactactacatatgtgagttacttgctatacaagtaatcaaccaaaactaaa |
3826489 |
T |
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| Q |
139 |
gtatcttatttattttatgtgcatgttgtttatcaaactgatgtagttctctaagtaacatatgaaacattttttgcagcatttggtaaaccacgtactt |
238 |
Q |
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| T |
3826488 |
gtatcttatttattttatgtgcatgtcgtttatcaaactgatgtagttctctaagtaacatatgaaacatgttttgcagcatttggtaaaccacgtactt |
3826389 |
T |
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| Q |
239 |
taatatcagcagaagccatgtctaatagacaattgaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttccta |
338 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826388 |
taatatcagcagaagccatgtctaagagacaatcgaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttccta |
3826289 |
T |
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| Q |
339 |
ttttgcttcaca |
350 |
Q |
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|||||||||||| |
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| T |
3826288 |
ttttgcttcaca |
3826277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 3825796 - 3825735
Alignment:
| Q |
185 |
ttctctaagtaacatatgaaacattttttgcagcatttggtaaaccacgtactttaatatca |
246 |
Q |
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| T |
3825796 |
ttctctaagcaccatatgaaacatttgttgcagcatttggtaaaccacagacattaatatca |
3825735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11752934 - 11753053
Alignment:
| Q |
18 |
agagagtcctatgtgagtgtaactatgtattctcattcgcaatgaaaactgtgacgttacatgtttatatactactacatatgtgagttacttgctatac |
117 |
Q |
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||||||| |||||||| |||||||||| ||| ||||| |||||||||| ||||| |||||| ||| |||||| | ||||||||||||| ||||||||| |
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| T |
11752934 |
agagagttctatgtgattgtaactatgaattttcattagcaatgaaaattgtgatgttacaagttcatatacaaaatcatatgtgagttaattgctatac |
11753033 |
T |
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| Q |
118 |
aagtaatcaaccaaaactaa |
137 |
Q |
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||| |||||||||||||||| |
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| T |
11753034 |
aaggaatcaaccaaaactaa |
11753053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 11755785 - 11755869
Alignment:
| Q |
47 |
ttctcattcgcaatgaaaactgtgacgttacatgtttatatactactacatatgtgagttacttgctatacaagtaatcaaccaa |
131 |
Q |
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|||| ||| |||||||||| ||||| |||||| |||||||||| || ||||||||||||| ||||||||||| |||| |||||| |
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| T |
11755785 |
ttcttattagcaatgaaaattgtgaggttacaagtttatatacaacatcatatgtgagttagttgctatacaattaataaaccaa |
11755869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 49772187 - 49772266
Alignment:
| Q |
270 |
attgaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctattttgcttcaca |
350 |
Q |
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| T |
49772187 |
attgaactgtcgcctaaattggaatgttcgtcaggtgagttacaa-ttagcttactaaacttcttcctattttacttcaca |
49772266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 49772070 - 49772143
Alignment:
| Q |
182 |
tagttctctaagtaacatatgaaacatttt-ttgcagcatttggtaaaccacgtactttaatatcagcagaagc |
254 |
Q |
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| T |
49772070 |
tagttctcttggtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatcagaagaagc |
49772143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 16943621 - 16943663
Alignment:
| Q |
94 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
136 |
Q |
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||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
16943621 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
16943663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 17014286 - 17014328
Alignment:
| Q |
94 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
136 |
Q |
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||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
17014286 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
17014328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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