View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18436_low_8 (Length: 359)
Name: NF18436_low_8
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_8 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 49746086 - 49746420
Alignment:
| Q |
13 |
aatattgccaaactcagatatatcttcccaacttgaataaatcgcttcttgtgtgttttctgaatcaacttcaaaatcgatattgtcaagttgcagatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49746086 |
aatattgccaaactcagatatatcttcccaactcgaataaattgcttcctgtgtgttttttgaatcaacttcaaaatcgatattgtcaagttgcagatca |
49746185 |
T |
|
| Q |
113 |
ctaacccattgcaaatcaagatggagccccaaagcttcacctatatcaatcgggtgaacaccaccaaaactggtggctctagccaacacaaacgttcctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49746186 |
ctaacccattgcaaatcaagatggagccccaaagcttcacctatatcaatcgggtgaacaccaccaaaactggtggctctagccaacacaaacgttcctc |
49746285 |
T |
|
| Q |
213 |
cttcgtcgcgaaggcatataccgatatcagtgtgattcctttgagtagaaaacacgacatcgatattacatttcatccttcttgacgcaggtgactacta |
312 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49746286 |
cttcgccgcgaaggcatatactgatatcagtgtgattcctttgagtagaaaacacgacatcgatattacatttcatccttcttgacgcaggtgactacta |
49746385 |
T |
|
| Q |
313 |
atacacctggggtagagtcgtgacagcaggaactg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
49746386 |
atacacctggggtagagtcgtgacagcaggaactg |
49746420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 44016 - 43916
Alignment:
| Q |
75 |
aatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaaatcaagatggagccccaaagcttcacctatatcaatcgggtgaacacc |
174 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| | ||||||||| | ||| ||| ||||||||||| || |||||||| | || |||||| |
|
|
| T |
44016 |
aatcaacttcaaaatcgatattgtcgagttgcatgtcactcatccattgcaaggcgtgatagagacccaaagcttcgccaatatcaatggagttaacacc |
43917 |
T |
|
| Q |
175 |
a |
175 |
Q |
| |
|
| |
|
|
| T |
43916 |
a |
43916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 17392229 - 17392316
Alignment:
| Q |
74 |
gaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaaatcaagatggagccccaaagcttcacctatatcaa |
161 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| | ||| ||| |||||||||||||| ||||||| |
|
|
| T |
17392229 |
gaatcaacttcaaagtcgatattgtcgagttgcatgtcactcaaccattgcaaggcgtgatagagacccaaagcttcaccaatatcaa |
17392316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 42080364 - 42080312
Alignment:
| Q |
74 |
gaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa |
126 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
42080364 |
gaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaa |
42080312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 23558664 - 23558581
Alignment:
| Q |
76 |
atcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaaatcaagatggagccccaaagcttcacctatatc |
159 |
Q |
| |
|
|||||| |||||||| |||||||| || ||| ||||| |||||||||||| |||||||||| ||||| ||||| || ||||| |
|
|
| T |
23558664 |
atcaacgtcaaaatcaatattgtccagacgcatatcacctacccattgcaaagcaagatggagtcccaacgcttcgcccatatc |
23558581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 13949028 - 13949080
Alignment:
| Q |
74 |
gaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa |
126 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
13949028 |
gaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaa |
13949080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University