View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18436_low_9 (Length: 328)
Name: NF18436_low_9
Description: NF18436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18436_low_9 |
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| [»] scaffold0383 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 3839523 - 3839840
Alignment:
| Q |
1 |
ttccttctctttttggttaatgaatctcagtaatgctctctgcattacatttgtttaaaaaaaatatatatataaagacttnnnnnnnnnt----cggaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||| | || || |
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| T |
3839523 |
ttccttctctttttggttaatgaatctcagtaatgctctctgcgttacttttgttttaaaaaa---tatatataaagacttaaaaaaaaattattcgaaa |
3839619 |
T |
|
| Q |
97 |
gaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaaacg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3839620 |
gaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaaaag |
3839719 |
T |
|
| Q |
197 |
agatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctttaataaatatat |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3839720 |
agatagaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcgaagaaatggtatgtggtctttaataaatatat |
3839819 |
T |
|
| Q |
297 |
aaccctctaaatcacaggttc |
317 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
3839820 |
aaccctctaaatcacaagttc |
3839840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 94 - 284
Target Start/End: Original strand, 24961998 - 24962188
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| |||||||||||| |
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| T |
24961998 |
gaagaatttttaatccaacaacttggaatcaaagaagcactaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagaattaattgaaa |
24962097 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctt |
284 |
Q |
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| T |
24962098 |
aagagatagaactaataagatcacagatcaaaagaaagagtccaattgatgaaattattgtaagagaaccaaagaaatggtatgtggtctt |
24962188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 94 - 283
Target Start/End: Original strand, 20407779 - 20407968
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
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|||||||||||||| |||||||||| ||| ||| ||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| | |||||||||| |
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| T |
20407779 |
gaagaattgttaatccaacaacttggaattaaagaagcactaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagagttaattgaaa |
20407878 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtct |
283 |
Q |
| |
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| T |
20407879 |
aagagatagaactaataagatcacaaatcaaaagaaagagtccaattgatgaaattattgtaagagaaccaaagaaatggtatgtggtct |
20407968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 284
Target Start/End: Original strand, 29080974 - 29081163
Alignment:
| Q |
95 |
aagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaaa |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||| ||| || ||||| ||||||||| ||||||||| |||| |
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| T |
29080974 |
aagaattgttaattcaacaacttgaaatcaaagaaggactaaaaactcacaaattgaaagaacaaaaattgattccaaaggaagtgaaattaattcaaaa |
29081073 |
T |
|
| Q |
195 |
cgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctt |
284 |
Q |
| |
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||||| |||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
29081074 |
agagatagaattaataaagtcacaaattaaaagaaagagttcaatggatgaaattatggtgaaggaaccgaagaaatagtatgtggtctt |
29081163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 47633407 - 47633360
Alignment:
| Q |
17 |
ttaatgaatctcagtaatgctctctgcattacatttgtttaaaaaaaa |
64 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
47633407 |
ttaatgaatctcagtaatgctctctgcattacttttgtcaaaaaaaaa |
47633360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 284
Target Start/End: Complemental strand, 23929070 - 23928880
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| |||||||||||| |
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| T |
23929070 |
gaagaattgttaatccaacaacttggaatcaaagaagcactaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagaattaattgaaa |
23928971 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctt |
284 |
Q |
| |
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| T |
23928970 |
aagagatagaactaataagatcacagatcaaaagaaagagtccaattgatgaaattattgtaagagaaccaaagaaatggtatgtggtctt |
23928880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 23933959 - 23934139
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| | |||||||||| |
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| T |
23933959 |
gaagaattgttaatccaacaacttggaatcaaagaagcactaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagagttaattgaaa |
23934058 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggt |
274 |
Q |
| |
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| ||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||||| || | ||| |||||||||||| |
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| T |
23934059 |
aagagatagaactaataagatcacagatcaaaagaaagagtccaattgatgaaattattgtaagagaaccaaagaaatggt |
23934139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 23930800 - 23930900
Alignment:
| Q |
184 |
ttaattgaaaacgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtct |
283 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||||| |
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|
| T |
23930800 |
ttaattgaaaatgagatagaactaataagatcacagatcaaaagaaagagtccaattgatgaaattattgtaagagaaccaaagaaatggtatgtggtct |
23930899 |
T |
|
| Q |
284 |
t |
284 |
Q |
| |
|
| |
|
|
| T |
23930900 |
t |
23930900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 94 - 284
Target Start/End: Original strand, 32262147 - 32262337
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| |||||||||||| |
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|
| T |
32262147 |
gaagaattgttaatccaacaacttggaatcaaagaagcactaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagaattaattgaaa |
32262246 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctt |
284 |
Q |
| |
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| ||||| ||| |||||| ||||| |||||||| |||||||||||||| |||||||| || | ||| |||||||||||||||||||||| |
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|
| T |
32262247 |
aagagatagaactaataagatcacagatcaaaagaaagagtccaattgacgaaattattgtaagagaaccaaagaaatggtatgtggtctt |
32262337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0383 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0383
Description:
Target: scaffold0383; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 284
Target Start/End: Complemental strand, 15005 - 14815
Alignment:
| Q |
94 |
gaagaattgttaattcaacaacttgaaatcaaataagcacttaaagctcacaaattgaaagatcaagaactgattggaaaggaagtaaaattaattgaaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||| | |||||||||||||| ||||| |||||| | ||||||||||||||| |||||||||||| |
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|
| T |
15005 |
gaagaattgttaatccaacaacttgtaatcaaagaagcattaaaagctcacaaattaaaagaacaagaattaattggaaaggaagtagaattaattgaaa |
14906 |
T |
|
| Q |
194 |
acgagatggaattaataaagtcacaaatcaaaaggaagagtccaattgatgaaattatggtgaaggaatcaaagaaatggtatgtggtctt |
284 |
Q |
| |
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| ||||| ||| |||||| ||||| |||||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||||||||| |
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|
| T |
14905 |
aagagatagaactaataagatcacagatcaaaagaaagagtccaatggatgaaattattgtaagagaactaaagaaatggtatgtggtctt |
14815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 7191659 - 7191610
Alignment:
| Q |
5 |
ttctctttttggttaatgaatctcagtaatgctctctgcattacatttgt |
54 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7191659 |
ttctctttttggttaatgaatctcagtaatgctctctgcattacttttgt |
7191610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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