View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18437_high_2 (Length: 410)
Name: NF18437_high_2
Description: NF18437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18437_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 33954674 - 33954274
Alignment:
| Q |
9 |
agagatggatgtcattatgtaatagacaaggtacttccagatgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatgttgaaaaatc |
108 |
Q |
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| T |
33954674 |
agagatggatgtcattatgtaatagacaaggtacttccagatgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatattgaaaaata |
33954575 |
T |
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| Q |
109 |
gtttcaagactaaaaatttaaaagtttaaggataagttaaataaatttgaatttagtcgagaataaaaatgaaatttaagaatagtttaagtatatgttg |
208 |
Q |
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| T |
33954574 |
gtttgaagaccaaaaatttaaaagtttaaggataagttaaataaatttgaatttagtcgggaataaaaatgaaatttaaggatagtttaaggatatgttg |
33954475 |
T |
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| Q |
209 |
aaaaatcacctttttaaggactaaaaatgaaatttgctttatttatatggaataaaaattgatatcacctttatataggtccaatgcacagagttaaata |
308 |
Q |
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| T |
33954474 |
aaaaatcacctttttaaggactaaaaatgaaatttgatttatttatatgcaataaaaattgatatcacctt--tataggtccaatgcacagagttcaata |
33954377 |
T |
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| Q |
309 |
tttaaggaaaaaaggtgtaaccaatatctataatccataggcaaatttggaaggggcaatacttgaagtggttgttcgtt-ttttagtaaaggactcacc |
407 |
Q |
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| T |
33954376 |
tttaaggaaaaaaggtgacaccaatatctataatccataggcaaatttggaaggggaaatactcgaagtggttgttcgttattttagtaaaagactcacc |
33954277 |
T |
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| Q |
408 |
aac |
410 |
Q |
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| T |
33954276 |
aac |
33954274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 257 - 393
Target Start/End: Complemental strand, 33978324 - 33978190
Alignment:
| Q |
257 |
ggaataaaaattgatatcacctttatataggtccaatgcacagagttaaatatttaaggaaaaaaggtgtaac--caatatctataatccataggcaaat |
354 |
Q |
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| T |
33978324 |
ggaataaaaacttatataacctttatg--ggtccaatgca--gagttcaatatttaaggaaaaaaggtgacacaccaatatctattatccataggcaaat |
33978229 |
T |
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| Q |
355 |
ttggaaggggcaatacttgaagtggttgttcgtttttta |
393 |
Q |
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| T |
33978228 |
ttggaaggggaaatacttgaagtggctgttcgtttttta |
33978190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 393
Target Start/End: Complemental strand, 33963001 - 33962867
Alignment:
| Q |
257 |
ggaataaaaattgatatcacctttatataggtccaatgcacagagttaaatatttaaggaaaaaaggtgtaac--caatatctataatccataggcaaat |
354 |
Q |
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| T |
33963001 |
ggaataaaaacttatataacctttatg--ggtccaatgca--gagttcaatatttaaggaaaaaaggtgacacaccaatatctattatccatacgcaaat |
33962906 |
T |
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| Q |
355 |
ttggaaggggcaatacttgaagtggttgttcgtttttta |
393 |
Q |
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| T |
33962905 |
ttggaagcggaaatacttgaagtggctgttcgtttttta |
33962867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 9188167 - 9188217
Alignment:
| Q |
50 |
tgaaatcaccacatattttgtcaagtctgaagaccaattggttgatatgtt |
100 |
Q |
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| T |
9188167 |
tgaaatcaccacagattttgtcaagtttgaagaccaattggctgatatgtt |
9188217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 5938328 - 5938364
Alignment:
| Q |
219 |
tttttaaggactaaaaatgaaatttgctttatttata |
255 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |
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| T |
5938328 |
ttttcaaggactaaaaatgaaatttgctatatttata |
5938364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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