View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18437_low_1 (Length: 503)
Name: NF18437_low_1
Description: NF18437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18437_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 44144728 - 44145212
Alignment:
| Q |
1 |
attgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttctataaaacaataa----tcgtaaata |
96 |
Q |
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| T |
44144728 |
attgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaaaaaaaaaaaaatcgtaaata |
44144827 |
T |
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| Q |
97 |
aacaactataatatcaggtgttttatagtcaaaaaatgccatcaaatttagactcacttgcaagcttcgaataggaggattattttattctttttgacat |
196 |
Q |
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| T |
44144828 |
aacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattattttaatttttttgacat |
44144927 |
T |
|
| Q |
197 |
gaaaacaagattttcattagagacataataagtcataacaaatgcaattcatggcaaggtctggaccattttaaaaccaaagtcctagaattcatgtgct |
296 |
Q |
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| T |
44144928 |
gaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtcctagaattcatgtgct |
44145027 |
T |
|
| Q |
297 |
gcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttctgcgtctgagtcaatga |
396 |
Q |
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| T |
44145028 |
gcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttctgcgtctgagtcaatga |
44145127 |
T |
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| Q |
397 |
tcaaattgtggaaatcttgcatctgaacccattgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaat |
481 |
Q |
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| T |
44145128 |
tcaaattgtggaaatcttgcatctaaacccgttgcaaacaccatatcaaggctagggattcaaccatcagaggagatagtgtaat |
44145212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 474
Target Start/End: Complemental strand, 44158411 - 44158235
Alignment:
| Q |
299 |
agtatttctttacagtccagaat--tatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttctgcgtctgagtcaatga |
396 |
Q |
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|||||||| ||| |||||||||| || ||| ||||||||||||||||| ||| || | ||| |||| |||| ||| | |||| | || | ||||||| |
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| T |
44158411 |
agtatttccttaaagtccagaatattaaatgatcaatgtcagcatgctt-cacttgtccaccaaagcagtgttttacaatttcaacatccgtctcaatga |
44158313 |
T |
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| Q |
397 |
tcaaattgtggaaatcttgcatctgaacccattgcaaacaccatatcaaggccagagattcagccatcagaggagata |
474 |
Q |
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| T |
44158312 |
tcaaattgtgaaatttttgttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagata |
44158235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 40893411 - 40893439
Alignment:
| Q |
276 |
aagtcctagaattcatgtgctgcagtatt |
304 |
Q |
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| T |
40893411 |
aagtcctagaattcatgtgctgcagtatt |
40893439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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