View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18437_low_2 (Length: 494)
Name: NF18437_low_2
Description: NF18437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18437_low_2 |
 | |
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| [»] scaffold0961 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 191147 - 190677
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191147 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
191048 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191047 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
190948 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
190947 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
190848 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
190847 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
190748 |
T |
|
| Q |
411 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
190747 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
190677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 718751 - 718281
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718751 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
718652 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718651 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
718552 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718551 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
718452 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718451 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
718352 |
T |
|
| Q |
411 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718351 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
718281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 879858 - 879388
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879858 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
879759 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879758 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
879659 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879658 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
879559 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879558 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
879459 |
T |
|
| Q |
411 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879458 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
879388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 247 - 377
Target Start/End: Complemental strand, 44239795 - 44239665
Alignment:
| Q |
247 |
ttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatgtttggat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
44239795 |
ttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctagtgccaacgcgttcattcttgacaacttgatccaaacatgtttggat |
44239696 |
T |
|
| Q |
347 |
gaatatttcattcactttaagatccgtccaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
44239695 |
gaatatttcattcactttaagatccgaccaa |
44239665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 399 - 481
Target Start/End: Original strand, 30983381 - 30983463
Alignment:
| Q |
399 |
ttatcattacttgaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30983381 |
ttatcattacttgaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
30983463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 44239665 - 44239603
Alignment:
| Q |
419 |
atccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44239665 |
atccgcggaaactttcttttgtttagccataatgctgtgtacacaaagtatgataggaaaaat |
44239603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Original strand, 51127706 - 51128176
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127706 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
51127805 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127806 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
51127905 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51127906 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
51128005 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51128006 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaactagctttagatctttgaactttatcattactt |
51128105 |
T |
|
| Q |
411 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51128106 |
gaaggaggatccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
51128176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 16249491 - 16249755
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
||||||||||| || ||| |||||||| |||||||| | |||||||| ||||| ||||| ||||||||| | || | ||||||||||||| | || | |
|
|
| T |
16249491 |
ttcacatacca-ttctttcttctcccatcactcatcagatgcatcaactatattcttttcaaaattccaccctaatctgataacttttccaaacaagtta |
16249589 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| ||||||||| || ||||||||||| | | | || |||||| |||||| ||||||| |
|
|
| T |
16249590 |
taccatactttccattcctttctcaagctatcatacatattcttcacttttcccttgtcataattcattcaacttaattcattaaattgagaaacaatac |
16249689 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||||||||| | || |||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
16249690 |
cttgccatcctttcttagtaaaacaagtaccaacatgttcaccattggtaacttgatccaaacatg |
16249755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 13893945 - 13893579
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13893945 |
catcatcatgtaattaacatgctaaatataaatctaagtattattaagcaacatatttgtgttttcacataccaattgtttgttctcccaccactcatct |
13893846 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
13893845 |
ggtgcatcaaaggtattcctctcattatcccaccccattccggtaacttttccaaataggttaaaccatactctccattcctttttcaaggcatcatacc |
13893746 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
13893745 |
tattcttcaattgaatcttgtcataatctctcccggttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctagtgccaacgcg |
13893646 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaa |
377 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13893645 |
ttcattcttgacaacttgatccaaacatgtttggatgaatatttcattcactttaagatccgaccaa |
13893579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 14034567 - 14034201
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14034567 |
catcatcatgtaattaacatgctaaatataaatctaagtattactaagcaacatatttgttttttcacataccaattgtttgttctcccaccactcatct |
14034468 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
14034467 |
ggtgcatcaaaggtattcctctcattatcccaccccattccggtaacttttccaaataggttaaactatactctccattcctttttcaaggcatcatacc |
14034368 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
14034367 |
tattcttcaattgaatcttgtcataatctctcccggttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctagtgctaacgcg |
14034268 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaa |
377 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14034267 |
ttcattcttgacaacttgatccaaacatgtttggatgaatatttcattcactttaagatccgaccaa |
14034201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 5919874 - 5920139
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| | |||||||| ||| ||| | ||| |||||| || | ||| |||||||||||||| | || | |
|
|
| T |
5919874 |
ttcacataccaattctttcttctcccaccactcatcggatgcatcaacggtgttcttctcaaaattccatcctaatcctgtaacttttccaaacaagtta |
5919973 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
5919974 |
taccatactttccattcctttctcaagctatcatacctattcttcaattgtaccttgtcataattcagtccactttgttcatgaaattgggaaacaatac |
5920073 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||| ||||| | || ||| | |||| ||||||| |||||||||||||||||| |
|
|
| T |
5920074 |
cttgccatcctttcttggtaaaacaagtaccatttcgttgacccttggtaacttgatccaaacatg |
5920139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 74 - 339
Target Start/End: Complemental strand, 36308630 - 36308365
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||| | |||||||| ||| ||| | ||| |||||| || | |||||||||||||||||| | || | |
|
|
| T |
36308630 |
ttcacataccaattctttcttctcccaccattcatcggatgcatcaacggtgttcttctcaaaattccatcctaatccggtaacttttccaaacaagtta |
36308531 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
36308530 |
taccatactttccattcctttctcaagctatcatacctattcttcaattgtaccttgtcataattcagtccactttgttcatgaaattgggaaacaatac |
36308431 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||| ||||| | || ||| | |||| ||||||| |||||||||||||||||| |
|
|
| T |
36308430 |
cttgccatcctttcttggtaaaacaagtaccatttcgttgacccttggtaacttgatccaaacatg |
36308365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 13893579 - 13893517
Alignment:
| Q |
419 |
atccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13893579 |
atccgcagaaactttcttttgtttagccataatgctatgtacacaaagtatgataggaaaaat |
13893517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 14034193 - 14034147
Alignment:
| Q |
427 |
aaactttcctttgcgtagccataatgctatgtacacaaagtatgata |
473 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14034193 |
aaactttcttttgtttagccataatgctatgtacacaaagtatgata |
14034147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 33230397 - 33230031
Alignment:
| Q |
11 |
catcatcatttaattaacatattaaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatct |
110 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33230397 |
catcatcatgtaattaacatgctaaatataaatctaagtattactaagcaacatatttgttttttcacataccaattgtttgttctcccaccactcatct |
33230298 |
T |
|
| Q |
111 |
ggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
33230297 |
ggtgcatcaaaggtattcctctcattatcccaccccattccggtaacttttccaaataggttaaactatactctccattcctttttcaaggcatcatacc |
33230198 |
T |
|
| Q |
211 |
tattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcg |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
33230197 |
tattcttcaattgaatcttgtcataatctctcccggttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctagtgctaacgcg |
33230098 |
T |
|
| Q |
311 |
ttcacccttgataacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaa |
377 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33230097 |
ttcattcttgacaacttgatccaaacatgtttggatgaatatttcattcactttaagatccgaccaa |
33230031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 126 - 377
Target Start/End: Original strand, 7072381 - 7072636
Alignment:
| Q |
126 |
ttcctttcattattccaccccattccggtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacc----tattcttcaat |
221 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||| ||||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
7072381 |
ttcctctcattatcccacctcattccagtaactttttcaaataggttataccatactctccattcctttttcaaggcatcatacctacctattcttcaat |
7072480 |
T |
|
| Q |
222 |
tgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcgttcacccttga |
321 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
7072481 |
tgaatcttgtcataatctctcccggttgattcatgaaattggcaaacaatgttttttcacccttgcttagtaaagctagtgccaatgtgttcattcttga |
7072580 |
T |
|
| Q |
322 |
taacttgatccaaacatgtttggatgaatatttcattcactttaagatccgtccaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7072581 |
caacttgatccaaacatgtttggatgaatatttcattcactttaagatccgaccaa |
7072636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 339
Target Start/End: Complemental strand, 22478547 - 22478282
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||| | |||||||| ||| ||| ||| |||||| || | |||||||||||||||||| | || | |
|
|
| T |
22478547 |
ttcacataccaattctttcttctcccaccattcatcggatgcatcaacggtgttctactcaaaattccatcctaatccggtaacttttccaaacaagtta |
22478448 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
22478447 |
taccatactttccattcctttctcaagctatcatacctattcttcaattgtaccttgtcataattcagtccactttgttcatgaaattgggaaacaatac |
22478348 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||| ||||| | || ||| | |||| ||||||| |||||||||||||||||| |
|
|
| T |
22478347 |
cttgccatcctttcttggtaaaacaagtaccatttcgttgacccttggtaacttgatccaaacatg |
22478282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 7072636 - 7072698
Alignment:
| Q |
419 |
atccgcggaaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7072636 |
atccgcagaaactttcctttgtttagccataatgctatgaacacatagtatgataggaaaaat |
7072698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 33230023 - 33229969
Alignment:
| Q |
427 |
aaactttcctttgcgtagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33230023 |
aaactttcttttgtttagccataatgctatgtacacaaagtatgataggaaaaat |
33229969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 473
Target Start/End: Original strand, 27738626 - 27738672
Alignment:
| Q |
427 |
aaactttcctttgcgtagccataatgctatgtacacaaagtatgata |
473 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27738626 |
aaactttcttttgtttagccataatgctatgtacacaaagtatgata |
27738672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 162 - 377
Target Start/End: Complemental strand, 12910268 - 12910055
Alignment:
| Q |
162 |
ccaaataggtcaaaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaatt |
261 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12910268 |
ccaaataggttaaaccatactc--cattcctttttcaaggcatcatacatattcttcaattgaatcttgtcataatctctcccggttgattcatgaaatt |
12910171 |
T |
|
| Q |
262 |
ggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatgtttggatgaatatttcattcac |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12910170 |
ggcaaacaatgtttttccaccctttcttagtaaagctagtgccaacgcgttcattcttgacaacttgatccaaacatgtttggatgaatatttcattcac |
12910071 |
T |
|
| Q |
362 |
tttaagatccgtccaa |
377 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
12910070 |
tttaagatccgaccaa |
12910055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 10374509 - 10374774
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| | |||||||| ||| ||| | ||| ||| || || | |||||||||||||| ||| | || | |
|
|
| T |
10374509 |
ttcacataccaattctttcttctcccaccactcatcggatgcatcaacggtgttcttctcaaaatttcatcctaatccggtaacttttctaaacaagtta |
10374608 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
10374609 |
taccatactttccattcctttctcaagttatcatacctattcttcaattgtaccttgtcataattcagtccactttgttcatgaaattgggaaacaatac |
10374708 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|||||| |||||||| ||||| | || ||| | |||| || |||| |||||||||| ||||||| |
|
|
| T |
10374709 |
ctttccatcctttcttggtaaaacaagtaccatttcgttgacacttggtaacttgatctaaacatg |
10374774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 37635886 - 37635742
Alignment:
| Q |
78 |
cataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtcaaacc |
177 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| | |||||||| ||||||| | ||| |||||| || | |||||||||||||||||| | || | || |
|
|
| T |
37635886 |
cataccaattctttcttctcccaccactcatcggatgcatcaacggtattcttctcaaaattccatcctaatccggtaacttttccaaacaagttatgcc |
37635787 |
T |
|
| Q |
178 |
atactctccattccattttcaaggtatcatacctattcttcaatt |
222 |
Q |
| |
|
||||| |||||||| || |||| |||||||| |||||||||||| |
|
|
| T |
37635786 |
atactttccattcctttctcaaactatcatacatattcttcaatt |
37635742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 481
Target Start/End: Complemental strand, 12910032 - 12909993
Alignment:
| Q |
442 |
tagccataatgctatgtacacaaagtatgataggaaaaat |
481 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12910032 |
tagccataatgctatgtacacaaaatatgataggaaaaat |
12909993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 37635642 - 37635458
Alignment:
| Q |
155 |
aacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattca |
254 |
Q |
| |
|
|||||||||||| | || | |||||||| |||||||| || ||||| |||||||| |||||||||||| ||||||||||| ||| || |||| |
|
|
| T |
37635642 |
aacttttccaaacaagttataccatactttccattcctttctcaagctatcatacatattcttcaattttaccttgtcataattcagtccactttgttca |
37635543 |
T |
|
| Q |
255 |
tgaaattggcaaacaatgtttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
| ||||||| ||||||| || ||| |||||||| ||||| | || ||| |||||| || |||| ||||||||||||||||| |
|
|
| T |
37635542 |
ttaaattgggaaacaatacattgccatcctttcttggtaaaacaagtaccattgcgttgactcttggaaacttgatccaaacatg |
37635458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 17833294 - 17833559
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||||| |||||||| ||| ||| | ||| |||||| || | |||||||||||||||||| | || | |
|
|
| T |
17833294 |
ttcacataccaattctttcttctcccaccattcatctgatgcatcaacggtgttcttctcaaaattccatcctaatccggtaacttttccaaacaagtta |
17833393 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
17833394 |
taccatactttccattcctttctcaagctatcatacctattcttcaattgtaccttgtgataattcagtccactttgttcatgaaattgggaaacaatac |
17833493 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||| ||||| | || ||| | |||| || |||| |||||||||||||||||| |
|
|
| T |
17833494 |
cttgccatcctttcttggtaaaacaagtaccatttcgttgacgcttggtaacttgatccaaacatg |
17833559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 16544856 - 16544693
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| | |||||||| ||| ||| | ||| |||||| || | |||||||||||||||||| | || | |
|
|
| T |
16544856 |
ttcacataccaattctttcttctcccaccactcatcggatgcatcaacggtgttcttctcaaaattccatcctaatccggtaacttttccaaacaagtta |
16544757 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataat |
237 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
16544756 |
taccatacattccattcctttctcaagctatcatacctattcttcaattgtaccttgtcataat |
16544693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 35572957 - 35573222
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||| | ||||||| ||| ||| | ||| |||||| || | |||||||||||||||||| | || | |
|
|
| T |
35572957 |
ttcacataccaattctttcttctcccaccattcatcggaggcatcaacggtgttcttctcaaaattccatcctaatccggtaacttttccaaacaagtta |
35573056 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattgattcttgtcataatctctcccagttgattcatgaaattggcaaacaatgt |
273 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
35573057 |
taccatactttccattcctttctcaagctatcatacctattcttcaattgtaccttgtcataattcagtccactttgttcatgaaattgggaaacaatac |
35573156 |
T |
|
| Q |
274 |
ttttccaccctttcttagtaaagctggtgccaatgcgttcacccttgataacttgatccaaacatg |
339 |
Q |
| |
|
|| ||| |||||||| ||||| | || ||| | |||| ||||||| |||||||||||||||||| |
|
|
| T |
35573157 |
cttgccatcctttcttggtaaaacaagtaccatttcgttgacccttggtaacttgatccaaacatg |
35573222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 3707 - 3856
Alignment:
| Q |
74 |
ttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccggtaacttttccaaataggtca |
173 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||| | ||||| || | | ||| | ||| |||||| || | | |||||||||||||||| | || | |
|
|
| T |
3707 |
ttcacataacaattctttcttctcccaccactcatcggatgcataaacgatgttcttctcaaaattccatcctaattcggtaacttttccaaacaagtta |
3806 |
T |
|
| Q |
174 |
aaccatactctccattccattttcaaggtatcatacctattcttcaattg |
223 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
3807 |
taccatactttccattcctttctcaagctatcatacctattcttcaattg |
3856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 15614033 - 15613865
Alignment:
| Q |
53 |
actaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattcctttcattattccaccccattccg |
152 |
Q |
| |
|
||||| ||| ||||||||| || |||||||||||| || ||||||||||| |||| | |||||||| |||||| | ||| ||| || || | |||| |
|
|
| T |
15614033 |
actaaacaagatatttgtgatt-cacataccaattcgttcttctcccaccagtcattggatgcatcaacagtattcttctcaaaatttcatcctaatccg |
15613935 |
T |
|
| Q |
153 |
gtaacttttccaaataggtcaaaccatactctccattccattttcaaggtatcatacctattcttcaatt |
222 |
Q |
| |
|
|||| |||| |||| | || | |||||||| |||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
15613934 |
gtaaatttttcaaacaagttataccatactttccattcctttctcaagctatcatacttattcttcaatt |
15613865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 37985262 - 37985356
Alignment:
| Q |
33 |
taaatataaatctaagtataactaagcaacatatttgtgttttcacataccaattgtttattctcccaccactcatctggtgcatcaaaggtattc |
128 |
Q |
| |
|
||||||||||| ||||||| ||||| || ||| ||||||| ||| |||||||||||| ||| ||||||| ||| |||||||||||| |||||| |
|
|
| T |
37985262 |
taaatataaatttaagtattactaaataagataagtgtgttt-cacgtaccaattgtttgttcggccaccacccatttggtgcatcaaatgtattc |
37985356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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