View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18437_low_5 (Length: 355)
Name: NF18437_low_5
Description: NF18437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18437_low_5 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 16657845 - 16657505
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657845 |
tttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
16657746 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657745 |
aaggattttgaaatggataaggaagaactcattaaactttggatggctaatggacttgttatatctagaggaaacttacagatggagcatgttggtaatg |
16657646 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16657645 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagtaggtaacattacatttaaaatgcatgatttagtccatgattt |
16657546 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgtgtctcttgtgatg |
341 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16657545 |
agctcagtctattatgggagaagaatgtgtctcttgtgatg |
16657505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 16868328 - 16868655
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868328 |
tttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
16868427 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868428 |
aaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggacttgttacatctagaggaaacttacagatggagcatgttggtaatg |
16868527 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868528 |
aggtatggaatgaattatatcaaaggtcattttttcaagaaatcaaatcagatttagtaggtaacattacattcaaaatgcatgatttagtccatgattt |
16868627 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgt |
328 |
Q |
| |
|
|||| ||||| |||| ||| |||||||| |
|
|
| T |
16868628 |
agctaagtctgttattggagaagaatgt |
16868655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 16780927 - 16780627
Alignment:
| Q |
6 |
ctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaagga |
105 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||| | ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16780927 |
ctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgtccttaaggccgtgttttactttttgtgctgtttttcctaagga |
16780828 |
T |
|
| Q |
106 |
tttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggta |
205 |
Q |
| |
|
||| ||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16780827 |
ttttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacagatggagcatgttggtaatgaggta |
16780728 |
T |
|
| Q |
206 |
tggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctc |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16780727 |
tggaatgaattataccaaaggtcattttttcaagaagttaaatcagattttgtaggtaacattacattcaaaatgcatgatttagtccatgatttagctc |
16780628 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
|
| |
|
|
| T |
16780627 |
a |
16780627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 16796982 - 16796673
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| || |
|
|
| T |
16796982 |
tcatgtctgctttgacactaagctactttaacttgaaattgtcattgaggccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaa |
16796883 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
16796882 |
ggaacatctcattcatctttggatggctaatggacttgttacatctagaggtaatttacagatggagcatgttggtaatgggatatgggatgaattatac |
16796783 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| | |
|
|
| T |
16796782 |
caaaggtcattttttcaagaagtcaaatcagatttagcaggtaacattacattcaaaatgcatgatttagtgcatgatttagctaagtctgttatggtag |
16796683 |
T |
|
| Q |
321 |
aagaatgtgt |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
16796682 |
aagaatgtgt |
16796673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 17069332 - 17069010
Alignment:
| Q |
8 |
gatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatt |
107 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17069332 |
gatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgtcattgaggccatgttttactttctgtgttgtttttcctaaggatt |
17069233 |
T |
|
| Q |
108 |
tagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatg |
207 |
Q |
| |
|
| | ||||| |||||| |||||||| |||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
17069232 |
ttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatttgttacatctagaggtaatttacagatggagcatgttggtaatgagatatg |
17069133 |
T |
|
| Q |
208 |
gaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcag |
307 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
17069132 |
ggatgaattataccaaaggtcattttttcaagaagtcaaatcagatttagcaggtaacattacatttaaaatgcatgatttagtccatgatttagctaag |
17069033 |
T |
|
| Q |
308 |
tctattatgggaaaagaatgtgt |
330 |
Q |
| |
|
||| |||| ||| |||||||||| |
|
|
| T |
17069032 |
tctgttattggagaagaatgtgt |
17069010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 341
Target Start/End: Complemental strand, 16787780 - 16787460
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||||| || |
|
|
| T |
16787780 |
tcatgtctgttttgagactaagctactttaacttgaaattgtccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaa |
16787681 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16787680 |
ggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattatac |
16787581 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
16787580 |
caaaggtcattttttcaagaagttaaatcagattttgttggtaacattacattcaaaatgcatgattttatccatgatttaggtcagtcttttatgggag |
16787481 |
T |
|
| Q |
321 |
aagaatgtgtctcttgtgatg |
341 |
Q |
| |
|
|||||||| | |||| ||||| |
|
|
| T |
16787480 |
aagaatgtatttcttatgatg |
16787460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 341
Target Start/End: Complemental strand, 16987267 - 16986947
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
|||| |||||||||||| | |||||||| ||| ||||||||||| | |||||||||||||| || ||||||||||||||||||||||| ||||||| || |
|
|
| T |
16987267 |
tcatttctgctttgagactaagctacttcaacatgaaattgtcactaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaa |
16987168 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
16987167 |
ggaagatctcattcatctttggatggctaatggacttgttacatctagaggtaatttacagatggagcatgttggtgatgaggtatggaatcaattatgg |
16987068 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
16987067 |
caaagatcattttttcaagaagttaaatctgatttaacaggtaacattacattcaaaatgcatgattttatccatgatttagctcaatctattatgggag |
16986968 |
T |
|
| Q |
321 |
aagaatgtgtctcttgtgatg |
341 |
Q |
| |
|
|||||||| | |||| ||||| |
|
|
| T |
16986967 |
aagaatgtatttcttatgatg |
16986947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 298
Target Start/End: Complemental strand, 16843584 - 16843342
Alignment:
| Q |
56 |
aaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataaggaagaactcattcaactttggatggctaatggac |
155 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||| |||||||| ||||| | ||||| |||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
16843584 |
aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat |
16843485 |
T |
|
| Q |
156 |
ttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagattt |
255 |
Q |
| |
|
|| || | || |||||||| ||| |||||||| | ||||| |||||||| ||||||||| |||| || || ||||||||||||||||||||| || || |
|
|
| T |
16843484 |
ttatttcctccagaggaaatttagagatggaggaggttggcaatgaggtgtggaatgaactataccagagatcattttttcaagaagtcgaaacacatga |
16843385 |
T |
|
| Q |
256 |
agcaggtaacattacattcaaaatgcatgatttagtccatgat |
298 |
Q |
| |
|
|| |||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
16843384 |
agaaggtaaagttacattcaaaatgcatgatatattccatgat |
16843342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 18806544 - 18806851
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| |||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
18806544 |
tcatgtctgttttgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa |
18806643 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
||||||||| || || |||||| ||||||||||| | | | || ||||| ||| || |||||||||||||| | || || ||||||||||||||| |
|
|
| T |
18806644 |
ggaagaactgatccatctttggttggctaatggattcatctcttccgttggaaatttagaggtggagcatgttggtcaagaagtgtggaatgaattatat |
18806743 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
|| ||||||||||||||||| || | ||| | ||| | ||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |
|
|
| T |
18806744 |
gcgagatcattttttcaagaagtaaaaactgataaaaagggtgaggttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggag |
18806843 |
T |
|
| Q |
321 |
aagaatgt |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
18806844 |
aagaatgt |
18806851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 18873538 - 18873845
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||| |||||| | ||||||||||| |||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
18873538 |
tcatgtctgtattgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa |
18873637 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
||||||||| || || |||||| ||||||||||| | | | || ||||| ||| || |||||||||||||| | || || ||||||||||||||| |
|
|
| T |
18873638 |
ggaagaactgatccatctttggttggctaatggattcatctcttccgttggaaatttagaggtggagcatgttggtcaagaagtgtggaatgaattatat |
18873737 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
|| |||||||||||||||||| || | ||| | ||| | ||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |
|
|
| T |
18873738 |
gcgagatcattttttcaagaagtcaaaactgataaaaagggtgaggttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggag |
18873837 |
T |
|
| Q |
321 |
aagaatgt |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
18873838 |
aagaatgt |
18873845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 18870507 - 18870677
Alignment:
| Q |
74 |
tgttttactttttgtgctgtttttcctaaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaa |
173 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| || || |||||| || |||||||| | | | || | |||| |
|
|
| T |
18870507 |
tgttttaccttttgtgaggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatggattcatctcttccattggaa |
18870606 |
T |
|
| Q |
174 |
acttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtc |
244 |
Q |
| |
|
| ||| || |||||||||||||| |||| || ||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
18870607 |
atttagaggtggagcatgttggtcatgaagtgtggaatgaattatatgagagatcattttttcaagaagtc |
18870677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 37323 - 36983
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37323 |
tttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
37224 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223 |
aaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
37124 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37123 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
37024 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgtgtctcttgtgatg |
341 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37023 |
agctcagtctattatgggagaagaatgtgtctcttgtgatg |
36983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 38939687 - 38940016
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
|||| |||| ||||||| | ||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38939687 |
tttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggccatgttttaatttttgtgctgtttttcct |
38939786 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38939787 |
aaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatcaagaggaaacttacagatggagcatgttggtaatg |
38939886 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38939887 |
aggtatggaatgaattataccaaaggtcattttttcaagaagtcaaatcagattttgtaggtaacattacattcaaaatgcatgatttaatccatgattt |
38939986 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgtgt |
330 |
Q |
| |
|
|||||||||| | |||||| |||||||||| |
|
|
| T |
38939987 |
agctcagtctgtaatgggagaagaatgtgt |
38940016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 7053614 - 7053923
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||| |||||||||| |||||| ||||||||||||||||||| || ||||| || || |||| |
|
|
| T |
7053614 |
tcatgtctgctttgaggctgagctactataatttgaaattgccattgaggccttgtttttctttttgtgctgtttttcccaaagattttgagatacataa |
7053713 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
7053714 |
ggaatgcctcattcatctttggatggctaatggacttcttacatctagaggaaatttacagatggagcttcttggtaatgaggtatggaatgaattatat |
7053813 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||| ||| ||| ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
7053814 |
caaagatcattttttcaagaagttaaatctgatatagtagggaacattacatttaaaatgcatgatttggttcatgatttagctcagtccattatgggag |
7053913 |
T |
|
| Q |
321 |
aagaatgtgt |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
7053914 |
aagaatgtgt |
7053923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 25293660 - 25293755
Alignment:
| Q |
73 |
atgttttactttttgtgctgtttttcctaaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctag |
168 |
Q |
| |
|
||||||| ||||||||||| | ||||| || ||| | |||| |||||||||||| | | ||| |||||||||||||||||| || || ||||||| |
|
|
| T |
25293660 |
atgttttgctttttgtgctatgtttccaaaagatacaaaaatcgataaggaagaattgactcatctttggatggctaatggatttatttcatctag |
25293755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 8964 - 8655
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||| || |
|
|
| T |
8964 |
tcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttactttttgtgctgtttttcctaaagattttaaaatggtgaa |
8865 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8864 |
ggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacagatggagcatgttggtaatgaggtatggaatgaattaaac |
8765 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8764 |
caaaggtcattctttcaagaagtcaaatccgattttgtaggtaacattactttcaaaatgcatgatttagtccatgatttagctcaatctgttatgggag |
8665 |
T |
|
| Q |
321 |
aagaatgtgt |
330 |
Q |
| |
|
|||| ||||| |
|
|
| T |
8664 |
aagagtgtgt |
8655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 17888 - 17559
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
|||| |||| ||||||| | | ||||||||||||||| | ||||||||||| ||||||| ||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17888 |
tttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgtccttgaggccctgttttactttttgtactgtttttcct |
17789 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17788 |
aaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgttacatcaagaggaaacttacagatggagcatgttggtaatg |
17689 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17688 |
aggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatcagattttgtaggtaacattacattcaaaatgcatgatttagtccatgattt |
17589 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgtgt |
330 |
Q |
| |
|
|||||| || ||||| ||| |||||||||| |
|
|
| T |
17588 |
agctcattccattattggagaagaatgtgt |
17559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 12662 - 12355
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||| || |
|
|
| T |
12662 |
tcatgtctgctttgagactaagctattttaacttgaaattgtcattgaggccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaa |
12563 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12562 |
ggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatac |
12463 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
12462 |
caaaggtcattatttgaagaagttaaatcagattttgtaggtaacattactttcaaaatgcatgattttgtccatgatttagcagtgtctattatgggag |
12363 |
T |
|
| Q |
321 |
aagaatgt |
328 |
Q |
| |
|
| |||||| |
|
|
| T |
12362 |
atgaatgt |
12355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 341
Target Start/End: Complemental strand, 8320 - 8000
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
8320 |
tcatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaa |
8221 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||| |||| | |
|
|
| T |
8220 |
ggaaaatctcattcatctttggatggctaatggtcttgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtgg |
8121 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
8120 |
caaagatcattttttcaagaagttaaatctgatttagcaggtaacattacattccgaatgcatgattttatccatgatttagctcagtctattatggaaa |
8021 |
T |
|
| Q |
321 |
aagaatgtgtctcttgtgatg |
341 |
Q |
| |
|
|||||||| | |||| ||||| |
|
|
| T |
8020 |
aagaatgtatttcttatgatg |
8000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 13377924 - 13377596
Alignment:
| Q |
1 |
tttagctgatgataaccatgtcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcct |
100 |
Q |
| |
|
|||| |||| ||||||| | ||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13377924 |
tttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggccatgttttactttttgtgctgtttttcct |
13377825 |
T |
|
| Q |
101 |
aaggatttagaaatggataaggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatg |
200 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
13377824 |
aaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgttacatctagaggaaacttaca-acggagcatgttggtaatg |
13377726 |
T |
|
| Q |
201 |
aggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgattt |
300 |
Q |
| |
|
|||||||| |||| |||| ||||| ||||||||||||||||| |||||||| | | ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13377725 |
aggtatgggatgagttatgccaaagatcattttttcaagaagttaaatcagatgtggtaggtaacataacattcaaaatgcatgatttagtccatgattt |
13377626 |
T |
|
| Q |
301 |
agctcagtctattatgggaaaagaatgtgt |
330 |
Q |
| |
|
|||||| || || |||||| |||||||||| |
|
|
| T |
13377625 |
agctcaatccataatgggagaagaatgtgt |
13377596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 9166 - 8859
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
9166 |
tcatgtctgttttgagactcagctactttaatttgaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa |
9067 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
||||| ||| || || |||||| ||||||||||| | | | || ||||| ||| || |||||||||||||| | || || ||||||||||||||| |
|
|
| T |
9066 |
ggaagcactgatccatctttggttggctaatggattcatctcttccgttggaaatttagaggtggagcatgttggtcaagaagtgtggaatgaattatat |
8967 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
|| ||||||||||||||||| || | ||| | ||| | ||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |
|
|
| T |
8966 |
gcgagatcattttttcaagaagtaaaaactgataaaaagggtgaggttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggag |
8867 |
T |
|
| Q |
321 |
aagaatgt |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
8866 |
aagaatgt |
8859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 4485 - 4178
Alignment:
| Q |
21 |
tcatgtctgctttgagattgagctactttaacttgaaattgtcattgaggccatgttttactttttgtgctgtttttcctaaggatttagaaatggataa |
120 |
Q |
| |
|
|||||| || ||||||| | ||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
4485 |
tcatgtttgttttgagactcagctactttaatttaaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaa |
4386 |
T |
|
| Q |
121 |
ggaagaactcattcaactttggatggctaatggacttgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatat |
220 |
Q |
| |
|
||||||||| || || |||||| ||||||||||| | | | || ||||| ||| || |||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
4385 |
ggaagaactgatccatctttggttggctaatggattcatctcttccgttggaaatttagaggtggagcatgttggtcatgaagtgtggaatgaattatat |
4286 |
T |
|
| Q |
221 |
caaaggtcattttttcaagaagtcgaatcagatttagcaggtaacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggaa |
320 |
Q |
| |
|
|| ||||||||||||||||| || | ||| | ||| | ||||||||||||||||||||||| | ||||||||||||||||| |||| ||| |
|
|
| T |
4285 |
gcgagatcattttttcaagaagtaaaaactgataaaaagggtgaggttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggag |
4186 |
T |
|
| Q |
321 |
aagaatgt |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
4185 |
aagaatgt |
4178 |
T |
|
Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 26707656 - 26707612
Alignment:
| Q |
119 |
aaggaagaactcattcaactttggatggctaatggacttgttgca |
163 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| |
|
|
| T |
26707656 |
aaggaagaattgattcaactttggatggctaatggatttattgca |
26707612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 30338307 - 30338351
Alignment:
| Q |
119 |
aaggaagaactcattcaactttggatggctaatggacttgttgca |
163 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| |
|
|
| T |
30338307 |
aaggaagaattgattcaactttggatggctaatggatttattgca |
30338351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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